Skip to main content

Local Subgroup Discovery for Eliciting and Understanding New Structure-Odor Relationships

  • Conference paper
  • First Online:
Discovery Science (DS 2016)

Abstract

From a molecule to the brain perception, olfaction is a complex phenomenon that remains to be fully understood in neuroscience. A challenge is to establish comprehensive rules between the physicochemical properties of the molecules (e.g., weight, atom counts) and specific and small subsets of olfactory qualities (e.g., fruity, woody). This problem is particularly difficult as the current knowledge states that molecular properties only account for \(30\,\%\) of the identity of an odor: predictive models are found lacking in providing universal rules. However, descriptive approaches enable to elicit local hypotheses, validated by domain experts, to understand the olfactory percept. Based on a new quality measure tailored for multi-labeled data with skewed distributions, our approach extracts the top-k unredundant subgroups interpreted as descriptive rules \(description \rightarrow \{subset\ of\ labels\}\). Our experiments on benchmark and olfaction datasets demonstrate the capabilities of our approach with direct applications for the perfume and flavor industries.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Notes

  1. 1.

    The generalized version of the WKL corresponds to the WKL measure restricted to the subset of labels \(L \subseteq Dom(C)\) of the local subgroup (dL).

  2. 2.

    http://mulan.sourceforge.net.

References

  1. Arctander, S.: Perfume and Flavor Materials of Natural Origin, vol. 2. Allured Publishing Corp., Carol Stream (1994)

    Google Scholar 

  2. Buck, L., Axel, R.: A novel multigene family may encode odorant receptors: a molecular basis for odor recognition. Cell 65(1), 175–187 (1991)

    Article  Google Scholar 

  3. Castro, J.B., Ramanathan, A., Chennubhotla, C.S.: Categorical dimensions of human odor descriptor space revealed by non-negative matrix factorization. PLoS ONE 8(9), 09 (2013)

    Google Scholar 

  4. de March, C.A., Ryu, S., Sicard, G., Moon, C., Golebiowski, J.: Structure-odour relationships reviewed in the postgenomic era. Flavour Fragr. J. 30(5), 342–361 (2015)

    Article  Google Scholar 

  5. Delasalle, C., de March, C.A., Meierhenrich, U.J., Brevard, H., Golebiowski, J., Baldovini, N.: Structure-odor relationships of semisynthetic \(\beta \)-santalol analogs. Chem. Biodivers. 11(11), 1843–1860 (2014)

    Article  Google Scholar 

  6. Duivesteijn, W., Feelders, A., Knobbe, A.J.: Exceptional model mining - supervised descriptive local pattern mining with complex target concepts. Data Min. Knowl. Discov. 30(1), 47–98 (2016)

    Article  MathSciNet  Google Scholar 

  7. Fayyad, U.M., Irani, K.B.: Multi-interval discretization of continuous-valued attributes for classification learning. In: IJCAI (1993)

    Google Scholar 

  8. Fürnkranz, J., Gamberger, D., Lavrač, N.: Foundations of Rule Learning. Springer, Heidelberg (2012)

    Book  MATH  Google Scholar 

  9. Galbrun, E., Miettinen, P.: From black and white to full color: extending redescription mining outside the Boolean world. Stat. Anal. Data Min. 5(4), 284–303 (2012)

    Article  MathSciNet  Google Scholar 

  10. Kaeppler, K., Mueller, F.: Odor classification: a review of factors influencing perception-based odor arrangements. Chem. Senses 38(3), 189–209 (2013)

    Article  Google Scholar 

  11. Kaytoue, M., Kuznetsov, S.O., Napoli, A.: Revisiting numerical pattern mining with formal concept analysis. In: IJCAI, pp. 1342–1347 (2011)

    Google Scholar 

  12. Keller, A., Vosshall, L., Meyer, P., Cecchi, G., Stolovitzky, G., Falcao, A., Norel, R., Norman, T., Hoff, B., Suver, C., Friend, S.: Dream olfaction prediction challenge (2015). www.synapse.org/#!Synapse:syn2811262. Sponsors: IFF, IBM Research, Sage Bionetworks and DREAM

  13. Khan, R.M., Luk, C.-H., Flinker, A., Aggarwal, A., Lapid, H., Haddad, R., Sobel, N.: Predicting odor pleasantness from odorant structure: pleasantness as a reflection of the physical world. J. Neurosci. 27(37), 10015–10023 (2007)

    Article  Google Scholar 

  14. Novak, P.K., Lavrač, N., Webb, G.I.: Supervised descriptive rule discovery: a unifying survey of contrast set, emerging pattern and subgroup mining. J. Mach. Learn. Res. 10, 377–403 (2009)

    MATH  Google Scholar 

  15. Tsoumakas, G., Katakis, I., Vlahavas, I.P.: Mining multi-label data. In: Data Mining and Knowledge Discovery Handbook, 2nd edn., pp. 667–685 (2010)

    Google Scholar 

  16. van Leeuwen, M., Knobbe, A.J.: Diverse subgroup set discovery. Data Min. Knowl. Discov. 25(2), 208–242 (2012)

    Article  MathSciNet  Google Scholar 

  17. Wrobel, S.: An algorithm for multi-relational discovery of subgroups. In: Komorowski, J., Zytkow, J. (eds.) PKDD 1997. LNCS, vol. 1263, pp. 78–87. Springer, Heidelberg (1997). doi:10.1007/3-540-63223-9_108

    Chapter  Google Scholar 

Download references

Acknowledgments

This research is partially supported by the CNRS (Préfute PEPS FASCIDO) and the Institut rhônalpin des systémes complexes (IXXI).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Guillaume Bosc .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2016 Springer International Publishing Switzerland

About this paper

Cite this paper

Bosc, G. et al. (2016). Local Subgroup Discovery for Eliciting and Understanding New Structure-Odor Relationships. In: Calders, T., Ceci, M., Malerba, D. (eds) Discovery Science. DS 2016. Lecture Notes in Computer Science(), vol 9956. Springer, Cham. https://doi.org/10.1007/978-3-319-46307-0_2

Download citation

  • DOI: https://doi.org/10.1007/978-3-319-46307-0_2

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-46306-3

  • Online ISBN: 978-3-319-46307-0

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics