Skip to main content

An Overview of the XSEDE Extended Collaborative Support Program

  • Conference paper
  • First Online:
High Performance Computer Applications (ISUM 2015)

Abstract

The Extreme Science and Engineering Discovery Environment (XSEDE) is a flagship cyberinfrastructure project funded by the US National Science Foundation (NSF). XSEDE’s Extended Collaborative Support Services (ECSS) program is a significant component of the XSEDE effort, dedicated to extended engagements with our user community which transform their research. We describe the organization, operation and some highlights of the program in this submission.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Towns, J., Cockerill, T., Dahan, M., Foster, I., Gaither, K., Grimshaw, A., Hazlewood, V., Lathrop, S., Lifka, D., Peterson, G.D., Roskies, R., Scott, J.R., Wilkins-Diehr, N.: XSEDE: Accelerating scientific discovery. Comput. Sci. Eng. 16(5), 62–74 (2014). doi:10.1109/MCSE.2014.80

    Article  Google Scholar 

  2. Cai, Y.D., Ratan, R.R., Shen, C., Alameda, J.: Grouping game players using parallelized k-means on supercomputers. In: Proceedings of the 2015 XSEDE Conference: Scientific Advancements Enabled by Enhanced Cyberinfrastructure, p. 10. ACM (2015)

    Google Scholar 

  3. Shen, S., Ratan, R., Cai, Y.D., Leavitt, A.: Do men perform better than women? Debunking the gender performance gap in two massively multiplayer online games. Journal of Computer-Mediated Communication (2015, submitted)

    Google Scholar 

  4. Springel, V.: The cosmological simulation code GADGET-2. Month. Not. R. Astron. Soc. 364(4), 1105–1134 (2005)

    Article  Google Scholar 

  5. Grabherr, M.G., Haas, B.J., Yassour, M., Levin, J.Z., Thompson, D.A., Amit, I., Adiconis, X., Fan, L., Raychowdhury, R., Zeng, Q., Chen, Z., Mauceli, E., Hacohen, N., Gnirke, A., Rhind, N., di Palma, F., Birren, B.W., Nusbaum, C., Lindblad-Toh, K., Friedman, N., Regev, A.: Full-length transcriptome assembly from RNA-seq data without a reference genome. Nat. Biotechnol. 29(7), 644–652 (2011). doi:10.1038/nbt.1883. PubMed PMID: 21572440

    Article  Google Scholar 

  6. Gnerre, S., MacCallum, I., Przybylski, D., Ribeiro, F., Burton, J., Walker, B., Sharpe, T., Hall, G., Shea, T., Sykes, S., Berlin, A., Aird, D., Costello, M., Daza, R., Williams, L., Nicol, R., Gnirke, A., Nusbaum, C., Lander, E.S., Jaffe, D.B.: High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proceed. Natl. Acad. Sci. USA 108(4), 1513–1518 (2011)

    Article  Google Scholar 

  7. Ribeiro, F., Przybylski, D., Yin, S., Sharpe, T., Gnerre, S., Abouelleil, A., Berlin, A.M., Montmayeur, A., Shea, T.P., Walker, B.J., Young, S.K., Russ, C., MacCallum, I., Nusbaum, C., Jaffe, D.B.: Finished bacterial genomes from shotgun sequence data. Genome Res. 22, 2270–2277 (2012)

    Article  Google Scholar 

  8. Pekurovsky, D.: P3DFFT: a framework for parallel computations of Fourier transforms in three dimensions. SIAM J. Sci. Comput. 34(4), C192–C209 (2012)

    Article  MathSciNet  MATH  Google Scholar 

  9. Bryan, Greg L., et al.: ENZO: an adaptive mesh refinement code for astrophysics. Astrophys. J. Suppl. Ser. 211(2), 19 (2014)

    Article  MathSciNet  Google Scholar 

  10. Jasak, H.: OpenFOAM: open source CFD in research and industry. Int. J. Naval Arch. Ocean Eng. 1(2), 89–94 (2014). doi:10.2478/ijnaoe-2013-0011. ISSN: 2092-6782

    Article  Google Scholar 

  11. Case, D.A., et al.: The amber biomolecular simulation programs. J. Comput. Chem. 26(16), 1668–1688 (2005)

    Article  Google Scholar 

  12. Wilkins-Diehr, N.: Special issue: science gateways—common community interfaces to grid resources. Concurrency Comput. Pract. Experience 19(6), 743–749 (2007)

    Article  Google Scholar 

  13. Goecks, J., Nekrutenko, A., Taylor, J.: Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol. 11(8) (2010). R86

    Google Scholar 

  14. https://github.com/galaxyproject/pulsar

  15. Shook, E., Wren, C., Marean, C.W., Potts, A.J., Franklin, J., Engelbrecht, F., O’Neal, D., Janssen, M., Fisher, E., Hill, K., Esler, K.J., Cowling, R.M., Scheiter, S., Moncrieff, G.: Paleoscape model of coastal South Africa during modern human origins: progress in scaling and coupling climate, vegetation, and agent-based models on XSEDE. In: Proceedings of the 2015 XSEDE Conference: Scientific Advancements Enabled by Enhanced Cyberinfrastructure, St. Louis, MO doi:10.1145/2792745.2792747

  16. https://github.com/HPCGISLab/naws

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Nancy Wilkins-Diehr .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2016 Springer International Publishing Switzerland

About this paper

Cite this paper

Wilkins-Diehr, N. et al. (2016). An Overview of the XSEDE Extended Collaborative Support Program. In: Gitler, I., Klapp, J. (eds) High Performance Computer Applications. ISUM 2015. Communications in Computer and Information Science, vol 595. Springer, Cham. https://doi.org/10.1007/978-3-319-32243-8_1

Download citation

  • DOI: https://doi.org/10.1007/978-3-319-32243-8_1

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-32242-1

  • Online ISBN: 978-3-319-32243-8

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics