Skip to main content

Aqueous Computing: Writing on Molecules Dissolved in Water

  • Chapter

Part of the book series: Natural Computing Series ((NCS))

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   84.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. L.M. Adleman (1994) Molecular computation of solutions to combinatorial problems, Science 266:1021–1024.

    Google Scholar 

  2. L.M. Adleman (1988) Computing with DNA, Sci. Amer. 279:54–61.

    Article  Google Scholar 

  3. M.S. Balan, K. Krithivasan, Y. Sivasubramanyam (2002) Peptide computing — universality and complexity. In: Jonoska, N. and Seeman, N.C. (eds) DNA Computing — 7th International Workshop on DNA-Based Computers, June 2001, Lect. Notes Comp. Sci. 2340, Springer, Heidelberg, Berlin, pp. 290–299.

    Google Scholar 

  4. T. Head (2000) Circular suggestions for DNA computing. In: A. Carbone, M. Gromov, P. Prusinkiewicz, (eds.) Pattern Formation in Biology, Vision and Dynamics, World Scientific, Singapore & London, pp. 325–335.

    Google Scholar 

  5. T. Head, X. Chen, M.J. Nichols, M. Yamamura, S. Gal (2002) Aqueous solutions of algorithmic problems: emphasizing knights on a 3X3. In: N. Jonoska and N.C. Seeman (eds.) DNA Computing — 7th International Workshop on DNA-Based Computers, June 2001, LNCS Vol. 2340, Springer, Heidleberg, Berlin, pp. 191–202.

    Google Scholar 

  6. T. Head, X. Chen, M. Yamamura, S. Gal (2002) Aqueous computing: a survey with an invitation to participate, J. Comput. Sci. Technol., 17:672–681.

    Article  MathSciNet  MATH  Google Scholar 

  7. T. Head, S. Gal (2001) Aqueous computing: writing into fluid memory, Bull. Europ. Assoc. Theor. Comput. Sci., 75:190–198. Updated version reprinted in: Gh. Paun, G. Rozenberg, A. Salomaa, (eds.) Current Trends in Theoretical Computer Science, Vol I, World Scientific, New Jersey pp. 493–503.

    Google Scholar 

  8. T. Head, G. Rozenberg, G. Bladergroen, C.D.K. Breek, P.H.M. Lomerese, H. Spaink (2000) Computing with DNA by operating on plasmids, Bio Systems, 57:87–93.

    Google Scholar 

  9. C. Henkel, (2005) Experimental DNA computing, Ph.D. dissertation, Leiden University, The Netherlands.

    Google Scholar 

  10. C. Henkel, R. Bladergroen, C. Balog, A. Deelder, T. Head, G. Rozenberg, H. Spaink, (2005) Protein output for DNA computing, Natural Computing, 4:1–10.

    Article  MATH  MathSciNet  Google Scholar 

  11. J.S. McCaskill (2001) Optically programming DNA computing in microflow reactors, Bio Systems, 59:125–138.

    Google Scholar 

  12. K. Mogi, S. Kaneda, K. Ono, T. Fukuba, T. Fujii (2004) A microfluidic network for write-in and read-out operations of a molecular memory, Proceedings of the 8th International Conference on Miniaturized Systems for Chemistry and Life Sciences, Malmö, Sweden pp. 569–572.

    Google Scholar 

  13. Q. Ouyang, P.D. Kaplan, S.M. Liu, A. Libchaber (1997) DNA solution of the maximal clique problem, Science 278:446–449.

    Article  Google Scholar 

  14. G. Rozenberg, H. Spaink (2003) DNA computing by blocking, Theor. Comput. Sci., 292:653–665.

    Article  MathSciNet  MATH  Google Scholar 

  15. K.A. Schmidt, C.V. Henkel, G. Rozenberg, H.P. Spaink (2004) DNA computing using single-molecule hybridization detection, Nucleic Acids Research 32:4962–4968.

    Article  Google Scholar 

  16. R. Siromoney, D. Bireswar, (2004) DNA algorithm for breaking propositional logic based cryptosystem, Bull. Eur. Assoc. Theor. Comput. Sci., 79:170–176.

    Google Scholar 

  17. R. Siromoney, B. Das (2004) Plasmids to solve #3SAT. In: N. Jonoska, Gh. PĂun, G. Rozenberg, (eds.) Aspects of Molecular Computing, Lect. Notes Comp. Sci. 2950, Springer, Heidelberg, Berlin, pp. 361–366.

    Google Scholar 

  18. N. Takahashi, A. Kameda, M. Yamamoto, A. Ohuchi (2005) Aqueous computing with DNA hairpin-based RAM. In: C. Ferretti, G. Mauri, C. Zandron, (eds.) DNA Computing — 10th International Meeting on DNA Computing, June 2004, Lect. Notes Comp. Sci. 3384 pp. 355–364.

    Google Scholar 

  19. M. Yamamura, T. Head, S. Gal (2000) Aqueous computing — mathematical principles of molecular memory and its biomolecular implementation, Chap. 2. In: H. Kitano, (ed.) Genetic Algorithms 4:49–73 (in Japanese).

    Google Scholar 

  20. M. Yamamura, Y. Hiroto, T. Matoba (2002) Another realization of aqueous computing with peptide nucleic acid. In: N. Jonoska, and N.C. Seeman, (eds.) DNA Computing — 7th International Workshop on DNA-Based Computers, June 2001, Lect. Notes Comp. Sci. 2340, Springer, Heidelberg, Berlin, pp. 213–222.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2006 Springer-Verlag Berlin Heidelberg

About this chapter

Cite this chapter

Head, T., Gal, S. (2006). Aqueous Computing: Writing on Molecules Dissolved in Water. In: Chen, J., Jonoska, N., Rozenberg, G. (eds) Nanotechnology: Science and Computation. Natural Computing Series. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-30296-4_20

Download citation

  • DOI: https://doi.org/10.1007/3-540-30296-4_20

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-30295-7

  • Online ISBN: 978-3-540-30296-4

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics