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Algorithms in Bioinformatics

15th International Workshop, WABI 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings

  • Conference proceedings
  • © 2015

Overview

Editors:
  1. Mihai Pop

    1. University of Maryland, College Park, USA

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    You can also search for this editor in PubMed   Google Scholar

  2. Hélène Touzet

    1. University of Lille, Lille, France

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    You can also search for this editor in PubMed   Google Scholar

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 9289)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: WABI 2015.

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Table of contents (23 papers)

  1. Front Matter

    Pages I-XX
    Download chapter PDF

  2. BicNET: Efficient Biclustering of Biological Networks to Unravel Non-Trivial Modules

    • Rui Henriques, Sara C. Madeira
    Pages 1-15

  3. Simultaneous Optimization of both Node and Edge Conservation in Network Alignment via WAVE

    • Yihan Sun, Joseph Crawford, Jie Tang, Tijana Milenković
    Pages 16-39

  4. The Topological Profile of a Model of Protein Network Evolution Can Direct Model Improvement

    • Todd A. Gibson, Debra S. Goldberg
    Pages 40-52

  5. Algorithms for Regular Tree Grammar Network Search and Their Application to Mining Human-Viral Infection Patterns

    • Ilan Smoly, Amir Carmel, Yonat Shemer-Avni, Esti Yeger-Lotem, Michal Ziv-Ukelson
    Pages 53-65

  6. Orthology Relation and Gene Tree Correction: Complexity Results

    • Manuel Lafond, Nadia El-Mabrouk
    Pages 66-79

  7. Finding a Perfect Phylogeny from Mixed Tumor Samples

    • Ademir Hujdurović, Urša Kačar, Martin Milanič, Bernard Ries, Alexandru I. Tomescu
    Pages 80-92

  8. A Sub-quadratic Time and Space Complexity Solution for the Dated Tree Reconciliation Problem for Select Tree Topologies

    • Benjamin Drinkwater, Michael A. Charleston
    Pages 93-107

  9. Maximum Parsimony Analysis of Gene Copy Number Changes

    • Jun Zhou, Yu Lin, Vaibhav Rajan, William Hoskins, Jijun Tang
    Pages 108-120

  10. Multiple-Ancestor Localization for Recently Admixed Individuals

    • Yaron Margalit, Yael Baran, Eran Halperin
    Pages 121-135

  11. Association Mapping for Compound Heterozygous Traits Using Phenotypic Distance and Integer Programming

    • Dan Gusfield, Rasmus Nielsen
    Pages 136-147

  12. Semi-nonparametric Modeling of Topological Domain Formation from Epigenetic Data

    • Emre Sefer, Carl Kingsford
    Pages 148-161

  13. Scrible: Ultra-Accurate Error-Correction of Pooled Sequenced Reads

    • Denise Duma, Francesca Cordero, Marco Beccuti, Gianfranco Ciardo, Timothy J. Close, Stefano Lonardi
    Pages 162-174

  14. Jabba: Hybrid Error Correction for Long Sequencing Reads Using Maximal Exact Matches

    • Giles Miclotte, Mahdi Heydari, Piet Demeester, Pieter Audenaert, Jan Fostier
    Pages 175-188

  15. Optimizing Read Reversals for Sequence Compression

    • Zhong Sichen, Lu Zhao, Yan Liang, Mohammadzaman Zamani, Rob Patro, Rezaul Chowdhury et al.
    Pages 189-202

  16. Circular Sequence Comparison with q-grams

    • Roberto Grossi, Costas S. Iliopoulos, Robert Mercaş, Nadia Pisanti, Solon P. Pissis, Ahmad Retha et al.
    Pages 203-216

  17. Bloom Filter Trie – A Data Structure for Pan-Genome Storage

    • Guillaume Holley, Roland Wittler, Jens Stoye
    Pages 217-230

  18. A Filtering Approach for Alignment-Free Biosequences Comparison with Mismatches

    • Cinzia Pizzi
    Pages 231-242

  19. Models and Algorithms for Genome Rearrangement with Positional Constraints

    • Krister M. Swenson, Mathieu Blanchette
    Pages 243-256

  20. Sparse RNA Folding Revisited: Space-Efficient Minimum Free Energy Prediction

    • Sebastian Will, Hosna Jabbari
    Pages 257-270
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Other volumes

  1. Algorithms in Bioinformatics

Keywords

About this book

This book constitutes the refereed proceedings of the 15th International Workshop on Algorithms in Bioinformatics, WABI 2015, held in Atlanta, GA, USA, in September 2015. The 23 full papers presented were carefully reviewed and selected from 56 submissions. The selected papers cover a wide range of topics from networks to phylogenetic studies, sequence and genome analysis, comparative genomics, and RNA structure.

Editors and Affiliations

  • University of Maryland, College Park, USA

    Mihai Pop

  • University of Lille, Lille, France

    Hélène Touzet

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