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  • © 2012

Computational Methods in Systems Biology

10th International Conference, CMSB 2012, London, UK, October 3-5, 2012, Proceedings

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 7605)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Conference series link(s): CMSB: International Conference on Computational Methods in Systems Biology

Conference proceedings info: CMSB 2012.

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  • ISBN: 978-3-642-33636-2
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Table of contents (28 papers)

  1. Front Matter

  2. Invited Talks

    1. Resolving the Three-Dimensional Histology of the Heart

      • Matthew Gibb, Rebecca A. B. Burton, Christian Bollensdorff, Carlos Afonso, Tahir Mansoori, Ulrich Schotten et al.
      Pages 2-16
    2. Bimodal Protein Distributions in Heterogeneous Oscillating Systems

      • Maciej Dobrzyński, Dirk Fey, Lan K. Nguyen, Boris N. Kholodenko
      Pages 17-28
  3. Regular Papers

    1. Expressive Statistical Model Checking of Genetic Networks with Delayed Stochastic Dynamics

      • Paolo Ballarini, Jarno Mäkelä, Andre S. Ribeiro
      Pages 29-48
    2. Symmetry-Based Model Reduction for Approximate Stochastic Analysis

      • Kirill Batmanov, Celine Kuttler, Francois Lemaire, Cédric Lhoussaine, Cristian Versari
      Pages 49-68
    3. Detection of Multi-clustered Genes and Community Structure for the Plant Pathogenic Fungus Fusarium graminearum

      • Laura Bennett, Artem Lysenko, Lazaros G. Papageorgiou, Martin Urban, Kim Hammond-Kosack, Chris Rawlings et al.
      Pages 69-86
    4. Predicting Phenotype from Genotype through Automatically Composed Petri Nets

      • Mary Ann Blätke, Monika Heiner, Wolfgang Marwan
      Pages 87-106
    5. Multi-objective Optimisation, Sensitivity and Robustness Analysis in FBA Modelling

      • Jole Costanza, Giovanni Carapezza, Claudio Angione, Pietro Liò, Giuseppe Nicosia
      Pages 127-147
    6. Analysis of Modular Organisation of Interaction Networks Based on Asymptotic Dynamics

      • Franck Delaplace, Hanna Klaudel, Tarek Melliti, Sylvain Sené
      Pages 148-165
    7. Concretizing the Process Hitting into Biological Regulatory Networks

      • Maxime Folschette, Loïc Paulevé, Katsumi Inoue, Morgan Magnin, Olivier Roux
      Pages 166-186
    8. Abstraction of Graph-Based Models of Bio-molecular Reaction Systems for Efficient Simulation

      • Ibuki Kawamata, Nathanael Aubert, Masahiro Hamano, Masami Hagiya
      Pages 187-206
    9. Parameter Identification and Model Ranking of Thomas Networks

      • Hannes Klarner, Adam Streck, David Šafránek, Juraj Kolčák, Heike Siebert
      Pages 207-226
    10. Investigating Co-infection Dynamics through Evolution of Bio-PEPA Model Parameters: A Combined Process Algebra and Evolutionary Computing Approach

      • David Marco, Erin Scott, David Cairns, Andrea Graham, Judi Allen, Simmi Mahajan et al.
      Pages 227-246
    11. Population Dynamics P Systems on CUDA

      • Miguel A. Martínez-del-Amor, Ignacio Pérez-Hurtado, Adolfo Gastalver-Rubio, Anne C. Elster, Mario J. Pérez-Jiménez
      Pages 247-266
    12. Approximate Bisimulations for Sodium Channel Dynamics

      • Abhishek Murthy, Md. Ariful Islam, Ezio Bartocci, Elizabeth M. Cherry, Flavio H. Fenton, James Glimm et al.
      Pages 267-287
    13. Efficient Handling of Large Signalling-Regulatory Networks by Focusing on Their Core Control

      • Aurélien Naldi, Pedro T. Monteiro, Claudine Chaouiya
      Pages 288-306
    14. Sequence Dependent Properties of the Expression Dynamics of Genes and Gene Networks

      • Ilya Potapov, Jarno Mäkelä, Olli Yli-Harja, Andre Ribeiro
      Pages 307-321

Other Volumes

  1. Computational Methods in Systems Biology

    10th International Conference, CMSB 2012, London, UK, October 3-5, 2012. Proceedings

About this book

This book constitutes the thoroughly refereed conference proceedings of the 10th International Conference on Computational Methods in Systems Biology, CMSB 2012, held in London, UK, during October 3-5, 2012. The 17 revised full papers and 8 flash posters presented together with the summaries of 3 invited papers were carefully reviewed and selected from 62 submissions. The papers cover the analysis of biological systems, networks, and data ranging from intercellular to multiscale. Topics included high-performance computing, and for the first time papers on synthetic biology.

Keywords

  • Petri nets
  • cellular systems
  • gene networks
  • model checking
  • population dynamics

Editors and Affiliations

  • School of Information Systems, Computing and Mathematics, Brunel University, Uxbridge, UK

    David Gilbert

  • Computer Science Institute, University of Technology, Cottbus, Germany

    Monika Heiner

Bibliographic Information

Buying options

eBook USD 74.99
Price excludes VAT (USA)
  • ISBN: 978-3-642-33636-2
  • Instant PDF download
  • Readable on all devices
  • Own it forever
  • Exclusive offer for individuals only
  • Tax calculation will be finalised during checkout
Softcover Book USD 95.00
Price excludes VAT (USA)