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Bioinformatics Research and Applications

8th International Symposium, ISBRA 2012, Dallas, TX, USA, May 21-23, 2012. Proceedings

  • Conference proceedings
  • © 2012

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Editors:
  1. Leonidas Bleris

    1. Departments of Bioengineering and Electrical Engineering, University of Texas at Dallas, Richardson, USA

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  2. Ion Măndoiu

    1. Department of Computer Science and Engineering, University of Connecticut, Storrs, USA

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  3. Russell Schwartz

    1. Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, USA

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  4. Jianxin Wang

    1. School of Information Science and Engineering, Central South University, Changsha, China

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 7292)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

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Conference proceedings info: ISBRA 2012.

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About this book

This book constitutes the refereed proceedings of the International Symposium on Bioinformatics Research and Applications, ISBRA 2012, held in Dallas, Texas, USA, in May 2012. The 26 revised full papers presented together with five invited talks were carefully reviewed and selected from 66 submissions. The papers address issues on various aspects of bioinformatics and computational biology and their applications.

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Table of contents (31 papers)

  1. Front Matter

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  2. Trie-based Apriori Motif Discovery Approach

    • Isra Al-Turaiki, Ghada Badr, Hassan Mathkour
    Pages 1-12

  3. Inapproximability of (1,2)-Exemplar Distance

    • Laurent Bulteau, Minghui Jiang
    Pages 13-23

  4. A Mixed Integer Programming Model for the Parsimonious Loss of Heterozygosity Problem

    • Daniele Catanzaro, Martine Labbé, Bjarni V. Halldórsson
    Pages 24-35

  5. Reconstruction of Transcription Regulatory Networks by Stability-Based Network Component Analysis

    • Xi Chen, Chen Wang, Ayesha N. Shajahan, Rebecca B. Riggins, Robert Clarke, Jianhua Xuan
    Pages 36-47

  6. A Transcript Perspective on Evolution

    • Yann Christinat, Bernard M. E. Moret
    Pages 48-59

  7. A Fast Algorithm for Computing the Quartet Distance for Large Sets of Evolutionary Trees

    • Ralph W. Crosby, Tiffani L. Williams
    Pages 60-71

  8. Error Propagation in Sparse Linear Systems with Peptide-Protein Incidence Matrices

    • Peter Damaschke, Leonid Molokov
    Pages 72-83

  9. Models and Algorithmic Tools for Computational Processes in Cellular Biology: Recent Developments and Future Directions

    • Bhaskar DasGupta
    Pages 84-86

  10. Identifying Rogue Taxa through Reduced Consensus: NP-Hardness and Exact Algorithms

    • Akshay Deepak, Jianrong Dong, David Fernández-Baca
    Pages 87-98

  11. Analytics Approaches for the Era of 10,000* Genomes *and Counting

    • Cynthia J. Gibas
    Pages 99-101

  12. GTP Supertrees from Unrooted Gene Trees: Linear Time Algorithms for NNI Based Local Searches

    • Paweł Górecki, J. Gordon Burleigh, Oliver Eulenstein
    Pages 102-114

  13. A Robinson-Foulds Measure to Compare Unrooted Trees with Rooted Trees

    • Paweł Górecki, Oliver Eulenstein
    Pages 115-126

  14. P-Binder: A System for the Protein-Protein Binding Sites Identification

    • Fei Guo, Shuai Cheng Li, Lusheng Wang
    Pages 127-138

  15. Non-identifiable Pedigrees and a Bayesian Solution

    • Bonnie Kirkpatrick
    Pages 139-152

  16. Iterative Piecewise Linear Regression to Accurately Assess Statistical Significance in Batch Confounded Differential Expression Analysis

    • Juntao Li, Kwok Pui Choi, R. Krishna Murthy Karuturi
    Pages 153-164

  17. Reconstruction of Network Evolutionary History from Extant Network Topology and Duplication History

    • Si Li, Kwok Pui Choi, Taoyang Wu, Louxin Zhang
    Pages 165-176

  18. POPE: Pipeline of Parentally-Biased Expression

    • Victor Missirian, Isabelle Henry, Luca Comai, Vladimir Filkov
    Pages 177-188

  19. On Optimizing the Non-metric Similarity Search in Tandem Mass Spectra by Clustering

    • Jiří Novák, David Hoksza, Jakub Lokoč, Tomáš Skopal
    Pages 189-200

  20. On the Comparison of Sets of Alternative Transcripts

    • Aïda Ouangraoua, Krister M. Swenson, Anne Bergeron
    Pages 201-212
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Other volumes

  1. Bioinformatics Research and Applications

Editors and Affiliations

  • Departments of Bioengineering and Electrical Engineering, University of Texas at Dallas, Richardson, USA

    Leonidas Bleris

  • Department of Computer Science and Engineering, University of Connecticut, Storrs, USA

    Ion Măndoiu

  • Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, USA

    Russell Schwartz

  • School of Information Science and Engineering, Central South University, Changsha, China

    Jianxin Wang

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