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  • Conference proceedings
  • © 2012

Research in Computational Molecular Biology

16th Annual International Conference, RECOMB 2012, Barcelona, Spain, April 21-24, 2012. Proceedings

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 7262)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Conference series link(s): RECOMB: International Conference on Research in Computational Molecular Biology

Conference proceedings info: RECOMB 2012.

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  • ISBN: 978-3-642-29627-7
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Table of contents (37 papers)

  1. Front Matter

  2. Protein Structure by Semidefinite Facial Reduction

    • Babak Alipanahi, Nathan Krislock, Ali Ghodsi, Henry Wolkowicz, Logan Donaldson, Ming Li
    Pages 1-11
  3. Ancestry Inference in Complex Admixtures via Variable-Length Markov Chain Linkage Models

    • Sivan Bercovici, Jesse M. Rodriguez, Megan Elmore, Serafim Batzoglou
    Pages 12-28
  4. Charge Group Partitioning in Biomolecular Simulation

    • Stefan Canzar, Mohammed El-Kebir, René Pool, Khaled Elbassioni, Alpesh K. Malde, Alan E. Mark et al.
    Pages 29-43
  5. Estimating the Accuracy of Multiple Alignments and its Use in Parameter Advising

    • Dan F. DeBlasio, Travis J. Wheeler, John D. Kececioglu
    Pages 45-59
  6. Quantifying the Dynamics of Coupled Networks of Switches and Oscillators

    • Matthew R. Francis, Elana J. Fertig
    Pages 60-61
  7. lobSTR: A Short Tandem Repeat Profiler for Personal Genomes

    • Melissa Gymrek, David Golan, Saharon Rosset, Yaniv Erlich
    Pages 62-63
  8. Ballast: A Ball-Based Algorithm for Structural Motifs

    • Lu He, Fabio Vandin, Gopal Pandurangan, Chris Bailey-Kellogg
    Pages 79-93
  9. Evolution of Genome Organization by Duplication and Loss: An Alignment Approach

    • Patrick Holloway, Krister Swenson, David Ardell, Nadia El-Mabrouk
    Pages 94-112
  10. LoopWeaver – Loop Modeling by the Weighted Scaling of Verified Proteins

    • Daniel Holtby, Shuai Cheng Li, Ming Li
    Pages 113-126
  11. A Robust Method for Transcript Quantification with RNA-seq Data

    • Yan Huang, Yin Hu, Corbin D. Jones, James N. MacLeod, Derek Y. Chiang, Yufeng Liu et al.
    Pages 127-147
  12. TrueSight: Self-training Algorithm for Splice Junction Detection Using RNA-seq

    • Yang Li, Hong-Mei Li, Paul Burns, Mark Borodovsky, Gene E. Robinson, Jian Ma
    Pages 163-164
  13. Synthetic Sequence Design for Signal Location Search

    • Yaw-Ling Lin, Charles Ward, Steven Skiena
    Pages 165-179
  14. Discovery of Complex Genomic Rearrangements in Cancer Using High-Throughput Sequencing

    • Andrew McPherson, Chunxiao Wu, Alexander Wyatt, Sohrab Shah, Colin Collins, S. Cenk Sahinalp
    Pages 181-182
  15. Network-Based Prediction and Analysis of HIV Dependency Factors

    • T. M. Murali, Matthew D. Dyer, David Badger, Brett M. Tyler, Michael G. Katze
    Pages 183-183
  16. Structure-Guided Deimmunization of Therapeutic Proteins

    • Andrew S. Parker, Karl E. Griswold, Chris Bailey-Kellogg
    Pages 184-198

Other Volumes

  1. Research in Computational Molecular Biology

    16th Annual International Conference, RECOMB 2012, Barcelona, Spain, April 21-24, 2012. Proceedings

About this book

This book constitutes the refereed proceedings of the 16th Annual International Conference on Research in Computational Molecular Biology, RECOMB 2012, held in Barcelona, Spain, in April 2012. The 31 revised full papers presented together with 5 keynote lectures were carefully reviewed and selected from 200 submissions. The papers feature current research in all areas of computational molecular biology, including: molecular sequence analysis; recognition of genes and regulatory elements; molecular evolution; protein structure; structural genomics; analysis of gene expression; biological networks; sequencing and genotyping technologies; drug design; probabilistic and combinatorial algorithms; systems biology; computational proteomics; structural and functional genomics; information systems for computational biology and imaging.

Keywords

  • combinatorial pattern matching
  • database search
  • multi-objective optimization
  • nuclear magnetic resonance
  • synthetic biology
  • algorithm analysis and problem complexity
  • data structures

Editors and Affiliations

  • Computer Science Department, Tel-Aviv University, Tel-Aviv, Israel

    Benny Chor

Bibliographic Information

Buying options

eBook USD 59.99
Price excludes VAT (USA)
  • ISBN: 978-3-642-29627-7
  • Instant PDF download
  • Readable on all devices
  • Own it forever
  • Exclusive offer for individuals only
  • Tax calculation will be finalised during checkout
Softcover Book USD 74.99
Price excludes VAT (USA)