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  • Conference proceedings
  • © 2010

Linking, Literature, Information, and Knowledge for Biologie

Workshop of the BioLINK Special Interest Group, ISBM/ECCB 2009, Stockholm, June 28-29, 2009, Revised Selected Papers

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 6004)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

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Table of contents (9 papers)

  1. Front Matter

  2. BioLINK 2009

    1. Overview of the Ninth Annual Meeting of the BioLINK SIG at ISMB: Linking Literature, Information and Knowledge for Biology

      • Christian Blaschke, Lynette Hirschman, Hagit Shatkay, Alfonso Valencia
      Pages 1-7
    2. Principles of Bioimage Informatics: Focus on Machine Learning of Cell Patterns

      • Luis Pedro Coelho, Estelle Glory-Afshar, Joshua Kangas, Shannon Quinn, Aabid Shariff, Robert F. Murphy
      Pages 8-18
    3. Structured Literature Image Finder: Extracting Information from Text and Images in Biomedical Literature

      • Luís Pedro Coelho, Amr Ahmed, Andrew Arnold, Joshua Kangas, Abdul-Saboor Sheikh, Eric P. Xing et al.
      Pages 23-32
    4. Toward Computer-Assisted Text Curation: Classification Is Easy (Choosing Training Data Can Be Hard...)

      • Robert Denroche, Ramana Madupu, Shibu Yooseph, Granger Sutton, Hagit Shatkay
      Pages 33-42
    5. Mining Protein-Protein Interactions from GeneRIFs with OpenDMAP

      • Andrew D. Fox, William A. Baumgartner Jr., Helen L. Johnson, Lawrence E. Hunter, Donna K. Slonim
      Pages 43-52
    6. Combining Semantic Relations and DNA Microarray Data for Novel Hypotheses Generation

      • Dimitar Hristovski, Andrej Kastrin, Borut Peterlin, Thomas C. Rindflesch
      Pages 53-61
    7. Learning from Positive and Unlabeled Documents for Retrieval of Bacterial Protein-Protein Interaction Literature

      • Hongfang Liu, Manabu Torii, Guixian Xu, Zhangzhi Hu, Johannes Goll
      Pages 62-70
    8. Extracting and Normalizing Gene/Protein Mentions with the Flexible and Trainable Moara Java Library

      • Mariana L. Neves, José Maria Carazo, Alberto Pascual-Montano
      Pages 71-80
  3. Back Matter

Keywords

  • DNA microarray data
  • GeneRIF
  • Java
  • OpenDMap
  • bioinformatics
  • biology
  • classification
  • image mining
  • information extraction
  • information retrieval
  • knowledge mining
  • machine learning
  • nlp
  • pattern matching
  • text mining
  • algorithm analysis and problem complexity

Editors and Affiliations

  • Bioalma, Tres Cantos, Madrid, Spain

    Christian Blaschke

  • Computational Biology and Machine Learning Lab, School of Computing, Queen’s University, Kingston, Canada

    Hagit Shatkay

Bibliographic Information

Buying options

eBook USD 74.99
Price excludes VAT (Canada)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 99.00
Price excludes VAT (Canada)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions