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  • Conference proceedings
  • © 2009

Research in Computational Molecular Biology

13th Annual International Conference, RECOMB 2009, Tucson, Arizona, USA, May 18-21, 2009, Proceedings

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 5541)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Conference series link(s): RECOMB: International Conference on Research in Computational Molecular Biology

Conference proceedings info: RECOMB 2009.

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Table of contents (36 papers)

  1. Front Matter

  2. Optimization-Based Peptide Mass Fingerprinting for Protein Mixture Identification

    • Zengyou He, Chao Yang, Can Yang, Robert Z. Qi, Jason Po-Ming Tam, Weichuan Yu
    Pages 16-30
  3. Boosting Protein Threading Accuracy

    • Jian Peng, Jinbo Xu
    Pages 31-45
  4. A Probabilistic Graphical Model for Ab Initio Folding

    • Feng Zhao, Jian Peng, Joe DeBartolo, Karl F. Freed, Tobin R. Sosnick, Jinbo Xu
    Pages 59-73
  5. Topology-Free Querying of Protein Interaction Networks

    • Sharon Bruckner, Falk Hüffner, Richard M. Karp, Ron Shamir, Roded Sharan
    Pages 74-89
  6. Cross Species Expression Analysis of Innate Immune Response

    • Yong Lu, Roni Rosenfeld, Gerard J. Nau, Ziv Bar-Joseph
    Pages 90-107
  7. Haplotype Inference in Complex Pedigrees

    • Bonnie Kirkpatrick, Javier Rosa, Eran Halperin, Richard M. Karp
    Pages 108-120
  8. Storage and Retrieval of Individual Genomes

    • Veli Mäkinen, Gonzalo Navarro, Jouni Sirén, Niko Välimäki
    Pages 121-137
  9. An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations

    • Arvind Ramanathan, Pratul K. Agarwal, Maria Kurnikova, Christopher J. Langmead
    Pages 138-154
  10. Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology

    • Alexandre Donzé, Gilles Clermont, Axel Legay, Christopher J. Langmead
    Pages 155-169
  11. How Many Bootstrap Replicates Are Necessary?

    • Nicholas D. Pattengale, Masoud Alipour, Olaf R. P. Bininda-Emonds, Bernard M. E. Moret, Alexandros Stamatakis
    Pages 184-200
  12. A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Series

    • Oliver Stegle, Katherine Denby, David L. Wild, Zoubin Ghahramani, Karsten M. Borgwardt
    Pages 201-216
  13. Incorporating Nucleosomes into Thermodynamic Models of Transcription Regulation

    • Tali Raveh-Sadka, Michal Levo, Eran Segal
    Pages 217-217
  14. Combinatorial Algorithms for Structural Variation Detection in High Throughput Sequenced Genomes

    • Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, S. Cenk Sahinalp
    Pages 218-219
  15. Optimizing PCR Assays for DNA Based Cancer Diagnostics

    • Ali Bashir, Qing Lu, Dennis Carson, Benjamin Raphael, Yu-Tsueng Liu, Vineet Bafna
    Pages 220-235
  16. COE: A General Approach for Efficient Genome-Wide Two-Locus Epistasis Test in Disease Association Study

    • Xiang Zhang, Feng Pan, Yuying Xie, Fei Zou, Wei Wang
    Pages 253-269

Other Volumes

  1. Research in Computational Molecular Biology

About this book

This book constitutes the refereed proceedings of the 13th Annual International Conference on Research in Computational Molecular Biology, RECOMB 2009, held in Tucson, Arisona, USA in May 2009. The 37 revised full papers presented were carefully reviewed and selected from 166 submissions. As the top conference in computational molecular biology, RECOMB addresses all current issues in algorithmic, theoretical, and experimental bioinformatics such as molecular sequence analysis, recognition of genes and regulatory elements, molecular evolution, protein structure, structural genomics, gene expression, gene networks, drug design, combinatorial libraries, computational proteomics, as well as structural and functional genomics.

Keywords

  • algorithms
  • bioinformatics
  • biology
  • cognition
  • evolution
  • gene family evolution
  • genome
  • immune response
  • molecular dynamics
  • nucleosomes
  • protein fingerprinting
  • protein folding
  • protein structures
  • spatial clustering
  • systems biology
  • algorithm analysis and problem complexity

Editors and Affiliations

  • Computer Science Department, James H. Clark Center, Stanford, USA

    Serafim Batzoglou

Bibliographic Information

Buying options

eBook USD 39.99
Price excludes VAT (Canada)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 54.99
Price excludes VAT (Canada)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions