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Applied Parallel Computing

State of the Art in Scientific Computing. 8th International Workshop, PARA 2006, Umea, Sweden, June 18-21, 2006, Revised Selected Papers

  • Conference proceedings
  • © 2007

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Editors:
  1. Bo Kågström
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  2. Erik Elmroth
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  3. Jack Dongarra
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  4. Jerzy Waśniewski
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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 4699)

Part of the book sub series: Theoretical Computer Science and General Issues (LNTCS)

Included in the following conference series:

Conference proceedings info: PARA 2006.

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Table of contents (135 papers)

  1. Front Matter

    Download chapter PDF

  2. Keynote Papers

    1. The Impact of Multicore on Math Software

      • Alfredo Buttari, Jack Dongarra, Jakub Kurzak, Julien Langou, Piotr Luszczek, Stanimire Tomov
      Pages 1-10

    2. Prospectus for the Next LAPACK and ScaLAPACK Libraries

      • James W. Demmel, Jack Dongarra, Beresford Parlett, William Kahan, Ming Gu, David Bindel et al.
      Pages 11-23

    3. Large-Scale Methods in Image Deblurring

      • Per Christian Hansen, Toke Koldborg Jensen
      Pages 24-35

    4. A Case Study in High-Performance Mixed-Language Programming

      • Hans Petter Langtangen
      Pages 36-49

  3. Minisymposia Papers

    1. Stretching Time and Length Scales in Biomolecular Modelling

      1. Stretching Time and Length Scales in Biomolecular Modelling: Minisymposium Abstract
        • Aatto Laaksonen
        Pages 50-50
      2. Averaged Configurations from Molecular Dynamics Simulations
        • K. Gillis, J. Vatamanu, M. S. Gulam Razul, Peter G. Kusalik
        Pages 51-58
      3. Atomistic Simulation Studies of Polymers and Water
        • Erik Johansson, Peter Ahlström
        Pages 59-65
      4. A New Monte Carlo Method for the Titration of Molecules and Minerals
        • Christophe Labbez, Bo Jönsson
        Pages 66-72
      5. Coarse Graining Biomolecular Systems
        • Mikael Lund
        Pages 73-81
      6. Molecular Dynamics Simulation Studies on the Modulation of Vitamin D Receptor Activity by Agonists and Antagonists
        • Mikael Peräkylä
        Pages 82-89
      7. Sparse Matrix Algebra for Quantum Modeling of Large Systems
        • Emanuel H. Rubensson, Elias Rudberg, Paweł Sałek
        Pages 90-99
      8. A Highly Efficient <i>Ab Initio</i> Tight-Binding-Like Approximate Density-Functional Quantum Mechanical Method
        • Yaoquan Tu, Lennart Nilsson, Aatto Laaksonen
        Pages 100-108
      9. Protein Folding Properties from Molecular Dynamics Simulations
        • David van der Spoel, Alexandra Patriksson, M. Marvin Seibert
        Pages 109-115

    2. Recent Advances in Dense Linear Algebra

      1. Recent Advances in Dense Linear Algebra: Minisymposium Abstract
        • Daniel Kressner, Julien Langou
        Pages 116-116
      2. Parallel Variants of the Multishift QZ Algorithm with Advanced Deflation Techniques
        • Björn Adlerborn, Bo Kågström, Daniel Kressner
        Pages 117-126
      3. Parallel Algorithms and Condition Estimators for Standard and Generalized Triangular Sylvester-Type Matrix Equations
        • Robert Granat, Bo Kågström
        Pages 127-136
      4. LAPACK-Style Codes for Pivoted Cholesky and <i>QR</i> Updating
        • Sven Hammarling, Nicholas J. Higham, Craig Lucas
        Pages 137-146
      5. Implementing Linear Algebra Routines on Multi-core Processors with Pipelining and a Look Ahead
        • Jakub Kurzak, Jack Dongarra
        Pages 147-156
      6. Specialized Spectral Division Algorithms for Generalized Eigenproblems Via the Inverse-Free Iteration
        • Mercedes Marqués, Enrique S. Quintana-Ortí, Gregorio Quintana-Ortí
        Pages 157-166
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