Comparative Genomics

RECOMB 2007 International Workshop, RECOMB-CG 2007, San Diego, CA, USA, September 16-18, 2007. Proceedings

  • Editors
  • Glenn Tesler
  • Dannie Durand
Conference proceedings RECOMB-CG 2007

Part of the Lecture Notes in Computer Science book series (LNCS, volume 4751)

Also part of the Lecture Notes in Bioinformatics book sub series (LNBI, volume 4751)

Table of contents

  1. Front Matter
    PDF
  2. Multi-break Rearrangements: From Circular to Linear Genomes
    Max A. Alekseyev
    Pages 1-15
  3. A Pseudo-boolean Programming Approach for Computing the Breakpoint Distance Between Two Genomes with Duplicate Genes
    Sébastien Angibaud, Guillaume Fertin, Irena Rusu, Annelyse Thévenin, Stéphane Vialette
    Pages 16-29
  4. Improving Inversion Median Computation Using Commuting Reversals and Cycle Information
    William Arndt, Jijun Tang
    Pages 30-44
  5. Inferring a Duplication, Speciation and Loss History from a Gene Tree (Extended Abstract)
    Cedric Chauve, Jean-Philippe Doyon, Nadia El-Mabrouk
    Pages 45-57
  6. How to Achieve an Equivalent Simple Permutation in Linear Time
    Simon Gog, Martin Bader
    Pages 58-68
  7. Baculovirus Phylogeny Based on Genome Rearrangements
    Daniel Goodman, Noah Ollikainen, Chris Sholley
    Pages 69-82
  8. Learning Gene Regulatory Networks via Globally Regularized Risk Minimization
    Yuhong Guo, Dale Schuurmans
    Pages 83-95
  9. Evolution of Tandemly Arrayed Genes in Multiple Species
    Mathieu Lajoie, Denis Bertrand, Nadia El-Mabrouk
    Pages 96-109
  10. Selecting Genomes for Reconstruction of Ancestral Genomes
    Guoliang Li, Jian Ma, Louxin Zhang
    Pages 110-121
  11. A Heuristic Algorithm for Reconstructing Ancestral Gene Orders with Duplications
    Jian Ma, Aakrosh Ratan, Louxin Zhang, Webb Miller, David Haussler
    Pages 122-135
  12. Reconstructing an Inversion History in the Anopheles Gambiae Complex
    Ai Xia, Maria V. Sharakhova, Igor V. Sharakhov
    Pages 136-148
  13. Recovering True Rearrangement Events on Phylogenetic Trees
    Hao Zhao, Guillaume Bourque
    Pages 149-161
  14. Parts of the Problem of Polyploids in Rearrangement Phylogeny
    Chunfang Zheng, Qian Zhu, David Sankoff
    Pages 162-176
  15. A Rigorous Analysis of the Pattern of Intron Conservation Supports the Coelomata Clade of Animals
    Jie Zheng, Igor B. Rogozin, Eugene V. Koonin, Teresa M. Przytycka
    Pages 177-191
  16. Back Matter
    PDF

About these proceedings

Keywords

DNA sequences algorithm algorithms ancestral genomes chromosome rearrangement comparative genomics comparative maps complexity computational biology computational genomics data analysis data mining duplication genome programming

Bibliographic information

  • DOI https://doi.org/10.1007/978-3-540-74960-8
  • Copyright Information Springer-Verlag Berlin Heidelberg 2007
  • Publisher Name Springer, Berlin, Heidelberg
  • eBook Packages Computer Science
  • Print ISBN 978-3-540-74959-2
  • Online ISBN 978-3-540-74960-8
  • Series Print ISSN 0302-9743
  • Series Online ISSN 1611-3349
  • About this book