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Advances in Bioinformatics and Computational Biology

16th Brazilian Symposium on Bioinformatics, BSB 2023, Curitiba, Brazil, June 13–16, 2023, Proceedings

  • Conference proceedings
  • © 2023

Overview

Editors:
  1. Marcelo S. Reis

    1. Universidade Estadual de Campinas, Campinas, Brazil

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    You can also search for this editor in PubMed   Google Scholar

  2. Raquel C. de Melo-Minardi

    1. Universidade Federal de Minas Gerais, Belo Horizonte, Brazil

    View editor publications

    You can also search for this editor in PubMed   Google Scholar

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 13954)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: BSB 2023.

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Table of contents (14 papers)

  1. Front Matter

    Pages i-xii
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  2. Block Interchange and Reversal Distance on Unbalanced Genomes

    • Alexsandro Oliveira Alexandrino, Gabriel Siqueira, Klairton Lima Brito, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
    Pages 1-13

  3. circTIS: A Weighted Degree String Kernel with Support Vector Machine Tool for Translation Initiation Sites Prediction in circRNA

    • Denilson Fagundes Barbosa, Liliane Santana Oliveira, André Yoshiaki Kashiwabara
    Pages 14-24

  4. Evaluating the Molecular—Electronic Structure and the Antiviral Effect of Functionalized Heparin on Graphene Oxide Through Ab Initio Computer Simulations and Molecular Docking

    • André Flores dos Santos, Mirkos Ortiz Martins, Mariana Zancan Tonel, Solange Binotto Fagan
    Pages 25-35

  5. Make No Mistake! Why Do Tools Make Incorrect Long Non-coding RNA Classification?

    • Alisson G. Chiquitto, Lucas Otávio L. Silva, Liliane Santana Oliveira, Douglas S. Domingues, Alexandre R. Paschoal
    Pages 36-45

  6. Spectrum-Based Statistical Methods for Directed Graphs with Applications in Biological Data

    • Victor Chavauty Villela, Eduardo Silva Lira, André Fujita
    Pages 46-57

  7. Feature Selection Investigation in Machine Learning Docking Scoring Functions

    • Maurício Dorneles Caldeira Balboni, Oscar Emilio Arrua, Adriano V. Werhli, Karina dos Santos Machado
    Pages 58-69

  8. Using Natural Language Processing for Context Identification in COVID-19 Literature

    • Frederico Carvalho, Diego Mariano, Marcos Bomfim, Giovana Fiorini, Luana Bastos, Ana Paula Abreu et al.
    Pages 70-81

  9. A Framework for Inference and Selection of Cell Signaling Pathway Dynamic Models

    • Marcelo Batista, Fabio Montoni, Cristiano Campos, Ronaldo Nogueira, Hugo A. Armelin, Marcelo S. Reis
    Pages 82-93

  10. Intentional Semantics for Molecular Biology

    • Edward H. Haeusler, Bruno Cuconato, Luiz A. Glatzl, Maria L. Guateque, Diogo M. Vieira, Elvismary M. de Armas et al.
    Pages 94-105

  11. transcAnalysis: A Snakemake Pipeline for Differential Expression and Post-transcriptional Modification Analysis

    • Pedro H. A. Barros, Waldeyr M. C. Silva, Marcelo M. Brigido
    Pages 106-111

  12. Peptide-Protein Interface Classification Using Convolutional Neural Networks

    • Lucas Moraes dos Santos, Diego Mariano, Luana Luiza Bastos, Alessandra Gomes Cioletti, Raquel Cardoso de Melo Minardi
    Pages 112-122

  13. A Power Law Semantic Similarity from Gene Ontology

    • Eric Augusto Ito, Fábio Fernandes da Rocha Vicente, Luiz Filipe Protasio Pereira, Fabricio Martins Lopes
    Pages 123-135

  14. Gene Networks Inference by Reinforcement Learning

    • Rodrigo Cesar Bonini, David Correa Martins-Jr
    Pages 136-147

  15. Exploring Identifiability in Hybrid Models of Cell Signaling Pathways

    • Ronaldo N. Sousa, Cristiano G. S. Campos, Willian Wang, Ronaldo F. Hashimoto, Hugo A. Armelin, Marcelo S. Reis
    Pages 148-159

  16. Back Matter

    Pages 161-162
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Other volumes

  1. Advances in Bioinformatics and Computational Biology

Keywords

About this book

This book constitutes the proceedings of the 16th Brazilian Symposium on Bioinformatics on Advances in Bioinformatics and Computational Biology, BSB 2023, which took place in Curitiba, Brazil, in June 2023. 

The 11 full papers and 3 short papers presented in this volume were carefully reviewed and selected from 24 submissions. The papers focus on bioinformatics, computational biology, Biological Databases, Biological Networks, Cheminformatics, Evolutionary Genomics, Computational Proteomics, Systems Biology, Drug Design, Genomics, Machine Learning applications in Bioinformatics, Metagenomics, Molecular Docking and Modeling, Molecular Evolution and Phylogenetics, Protein Structure and Modeling, Proteomics, Transcriptomics, Single-Cell Analysis, Workflows in Bioinformatics. 

Editors and Affiliations

  • Universidade Estadual de Campinas, Campinas, Brazil

    Marcelo S. Reis

  • Universidade Federal de Minas Gerais, Belo Horizonte, Brazil

    Raquel C. de Melo-Minardi

Bibliographic Information

  • Book Title: Advances in Bioinformatics and Computational Biology

  • Book Subtitle: 16th Brazilian Symposium on Bioinformatics, BSB 2023, Curitiba, Brazil, June 13–16, 2023, Proceedings

  • Editors: Marcelo S. Reis, Raquel C. de Melo-Minardi

  • Series Title: Lecture Notes in Computer Science

  • DOI: https://doi.org/10.1007/978-3-031-42715-2

  • Publisher: Springer Cham

  • eBook Packages: Computer Science, Computer Science (R0)

  • Copyright Information: The Editor(s) (if applicable) and The Author(s), under exclusive license to Springer Nature Switzerland AG 2023

  • Softcover ISBN: 978-3-031-42714-5Published: 02 September 2023

  • eBook ISBN: 978-3-031-42715-2Published: 01 September 2023

  • Series ISSN: 0302-9743

  • Series E-ISSN: 1611-3349

  • Edition Number: 1

  • Number of Pages: XII, 162

  • Number of Illustrations: 10 b/w illustrations, 57 illustrations in colour

  • Topics: Bioinformatics, Artificial Intelligence, Computer Applications

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