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  • Conference proceedings
  • © 2021

Computational Methods in Systems Biology

19th International Conference, CMSB 2021, Bordeaux, France, September 22–24, 2021, Proceedings

Editors:

  1. Eugenio Cinquemani

    1. Univ. Grenoble Alpes, Inria, Grenoble, France

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  2. Loïc Paulevé

    1. Univ. Bordeaux, Bordeaux INP, CNRS, LaBRI, UMR5800, Talence, France

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 12881)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Conference series link(s): CMSB: International Conference on Computational Methods in Systems Biology

Conference proceedings info: CMSB 2021.

Sections

eBook USD 54.99
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  • ISBN: 978-3-030-85633-5
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Table of contents (18 papers)

  1. Front Matter

    Pages i-xii
    PDF

  2. Reducing Boolean Networks with Backward Boolean Equivalence

    • Georgios Argyris, Alberto Lluch Lafuente, Mirco Tribastone, Max Tschaikowski, Andrea Vandin
    Pages 1-18

  3. Abstraction of Markov Population Dynamics via Generative Adversarial Nets

    • Francesca Cairoli, Ginevra Carbone, Luca Bortolussi
    Pages 19-35

  4. Greening R. Thomas’ Framework with Environment Variables: A Divide and Conquer Approach

    • Laetitia Gibart, Hélène Collavizza, Jean-Paul Comet
    Pages 36-56

  5. Automated Inference of Production Rules for Glycans

    • Ansuman Biswas, Ashutosh Gupta, Meghana Missula, Mukund Thattai
    Pages 57-73

  7. Interpretable Exact Linear Reductions via Positivity

    • Gleb Pogudin, Xingjian Zhang
    Pages 91-107

  8. Explainable Artificial Neural Network for Recurrent Venous Thromboembolism Based on Plasma Proteomics

    • Misbah Razzaq, Louisa Goumidi, Maria-Jesus Iglesias, Gaëlle Munsch, Maria Bruzelius, Manal Ibrahim-Kosta et al.
    Pages 108-121

  9. Neural Networks to Predict Survival from RNA-seq Data in Oncology

    • Mathilde Sautreuil, Sarah Lemler, Paul-Henry Cournède
    Pages 122-140

  10. Microbial Community Decision Making Models in Batch and Chemostat Cultures

    • Axel Theorell, Jörg Stelling
    Pages 141-158Open Access

  11. Learning Boolean Controls in Regulated Metabolic Networks: A Case-Study

    • Kerian Thuillier, Caroline Baroukh, Alexander Bockmayr, Ludovic Cottret, Loïc Paulevé, Anne Siegel
    Pages 159-180

  12. Population Design for Synthetic Gene Circuits

    • Baptiste Turpin, Eline Y. Bijman, Hans-Michael Kaltenbach, Jörg Stelling
    Pages 181-197Open Access

  13. Nonlinear Pattern Matching in Rule-Based Modeling Languages

    • Tom Warnke, Adelinde M. Uhrmacher
    Pages 198-214

  15. Aeon 2021: Bifurcation Decision Trees in Boolean Networks

    • Nikola Beneš, Luboš Brim, Samuel Pastva, David Šafránek
    Pages 230-237

  16. LNetReduce: Tool for Reducing Linear Dynamic Networks with Separated Timescales

    • Marion Buffard, Aurélien Desoeuvres, Aurélien Naldi, Clément Requilé, Andrei Zinovyev, Ovidiu Radulescu
    Pages 238-244

  18. Web-Based Structural Identifiability Analyzer

    • Ilia Ilmer, Alexey Ovchinnikov, Gleb Pogudin
    Pages 254-265

  19. BioFVM-X: An MPI+OpenMP 3-D Simulator for Biological Systems

    • Gaurav Saxena, Miguel Ponce-de-Leon, Arnau Montagud, David Vicente Dorca, Alfonso Valencia
    Pages 266-279Open Access

  20. Back Matter

    Pages 281-281
    PDF
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Other Volumes

  1. Computational Methods in Systems Biology

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About this book

This book constitutes the refereed proceedings of the 19th International Conference on Computational Methods in Systems Biology, CMSB 2021, held in Bordeaux, France, September 22–24, 2021.*
The 13 full papers and 5 tool papers were carefully reviewed and selected from 32 submissions. The topics of interest include biological process modelling; biological system model verification, validation, analysis, and simulation; high-performance computational systems biology; model inference from experimental data; multi-scale modeling and analysis methods; computational approaches for synthetic biology; machine learning and data-driven approaches; microbial ecology modelling and analysis; methods and protocols for populations and their variability; models, applications, and case studies in systems and synthetic biology. The chapters "Microbial Community Decision Making Models in Batch", "Population design for synthetic gene circuits", "BioFVM-X: An MPI+OpenMP 3-D Simulator for Biological Systems" are published open access under a CC BY license (Creative Commons Attribution 4.0 International License). 

* The conference was held in a hybrid mode due to the COVID-19 pandemic.
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Keywords

  • adaptive control systems
  • artificial intelligence
  • automation
  • computer networks
  • computer programming
  • computer systems
  • differential equations
  • distributed computer systems
  • embedded systems
  • formal logic
  • fuzzy control
  • fuzzy sets
  • linear matrix inequalities
  • matrix algebra
  • network architecture
  • network protocols
  • numerical methods
  • probability
  • signal processing
  • software engineering
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Editors and Affiliations

  • Univ. Grenoble Alpes, Inria, Grenoble, France

    Eugenio Cinquemani

  • Univ. Bordeaux, Bordeaux INP, CNRS, LaBRI, UMR5800, Talence, France

    Loïc Paulevé

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Bibliographic Information

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Access via your institution
eBook USD 54.99
Price excludes VAT (USA)
  • ISBN: 978-3-030-85633-5
  • Instant PDF download
  • Readable on all devices
  • Own it forever
  • Exclusive offer for individuals only
  • Tax calculation will be finalised during checkout
Softcover Book USD 69.99
Price excludes VAT (USA)
Learn about institutional subscriptions