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  • Conference proceedings
  • © 2019

Hybrid Systems Biology

6th International Workshop, HSB 2019, Prague, Czech Republic, April 6-7, 2019, Revised Selected Papers

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 11705)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Conference series link(s): HSB: International Workshop on Hybrid Systems Biology

Conference proceedings info: HSB 2019.

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  • ISBN: 978-3-030-28042-0
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Table of contents (12 papers)

  1. Front Matter

    Pages i-xvi
  2. Invited Papers

    1. Front Matter

      Pages 1-1
    2. A Multimodular System to Study the Impact of a Focal Lesion in Neuronal Cell Cultures

      • Alberto Averna, Marta Carè, Stefano Buccelli, Marianna Semprini, Francesco Difato, Michela Chiappalone
      Pages 3-15
    3. Reaction Networks, Oscillatory Motifs and Parameter Estimation in Biochemical Systems

      • Igor Schreiber, František Muzika, Jan Červený
      Pages 30-41
  3. Regular Papers

    1. Front Matter

      Pages 43-43
    2. Fixed-Point Computation of Equilibria in Biochemical Regulatory Networks

      • Isabel Cristina Pérez-Verona, Mirco Tribastone, Max Tschaikowski
      Pages 45-62
    3. Extracting Landscape Features from Single Particle Trajectories

      • Ádám M. Halász, Brandon L. Clark, Ouri Maler, Jeremy S. Edwards
      Pages 98-116
    4. A Hybrid HMM Approach for the Dynamics of DNA Methylation

      • Charalampos Kyriakopoulos, Pascal Giehr, Alexander Lück, Jörn Walter, Verena Wolf
      Pages 117-131
    5. Using a Hybrid Approach to Model Central Carbon Metabolism Across the Cell Cycle

      • Cecile Moulin, Laurent Tournier, Sabine Peres
      Pages 132-146
    6. Data-Informed Parameter Synthesis for Population Markov Chains

      • Matej Hajnal, Morgane Nouvian, David Šafránek, Tatjana Petrov
      Pages 147-164
    7. rPrism – A Software for Reactive Weighted State Transition Models

      • Daniel Figueiredo, Eugénio Rocha, Manuel António Martins, Madalena Chaves
      Pages 165-174
  4. Short Paper

    1. Front Matter

      Pages 175-175
  5. Back Matter

    Pages 181-181

Other Volumes

  1. Hybrid Systems Biology

    6th International Workshop, HSB 2019, Prague, Czech Republic, April 6-7, 2019, Revised Selected Papers

About this book

This book constitutes the thoroughly refereed proceedings of the 6th International Workshop on Hybrid Systems Biology, HSB 2019, held in Prague, Czech Republic, in April 2019.
The 8 full papers presented in this book together with 1 short paper and 3 invited papers were carefully reviewed and selected from 13 submissions. They cover topics such as: modeling and analysis of metabolic, signaling, and genetic regulatory networks in living cells; models of tissues, organs, physiological models; models and methods coping with incomplete, uncertain and heterogeneous information including learning for biological systems, parametric synthesis and inference; stochastic and hybrid models in biology; hierarchical systems for multi-scale, multi-domain analysis; abstraction, approximation, discretization, and model reduction techniques; modeling, analysis and design for synthetic biology, cyber-biological systems and biomedical studies (e.g. therapies, teleoperation); game-theoretical frameworks and population models in biology (e.g. mixed-effects and Bayesian modeling); biological applications of quantitative and formal analysis techniques (e.g. reachability computation, model checking, abstract interpretation, bifurcation theory, stability and sensitivity analysis); efficient techniques for combined and heterogeneous (stochastic/deterministic, spatial/non-spatial) simulations for biological models; modeling languages and logics for biological systems with related analysis and simulation tools; and control architectures of biological systems including biology-in-the-loop systems and bio-robotics.

 

Keywords

  • computational biology
  • biological networks
  • systems biology
  • timed and hybrid models
  • estimation
  • verification
  • synthesis
  • inference
  • differential equations
  • stochastic processes
  • logic
  • bioinformatics
  • numerical methods
  • ordinary differential equations
  • probability
  • Markov chains

Editors and Affiliations

  • Brno University of Technology, Brno, Czech Republic

    Milan Češka

  • University of London, Royal Holloway, Egham, UK

    Nicola Paoletti

Bibliographic Information

Buying options

eBook USD 44.99
Price excludes VAT (USA)
  • ISBN: 978-3-030-28042-0
  • Instant PDF download
  • Readable on all devices
  • Own it forever
  • Exclusive offer for individuals only
  • Tax calculation will be finalised during checkout
Softcover Book USD 59.99
Price excludes VAT (USA)