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Functional Genomics

Methods and Protocols

  • Michael Kaufmann
  • Claudia Klinger

Part of the Methods in Molecular Biology book series (MIMB, volume 815)

Table of contents

  1. Front Matter
    Pages i-xv
  2. Bioinformatics

    1. Front Matter
      Pages 1-1
    2. Jingfen Zhang, Zhiquan He, Qingguo Wang, Bogdan Barz, Ioan Kosztin, Yi Shang et al.
      Pages 3-13
    3. Roy D. Sleator
      Pages 15-24
    4. Claus Desler, Jon Ambæk Durhuus, Lene Juel Rasmussen
      Pages 25-38
    5. Ron Ophir, Amir Sherman
      Pages 39-47
  3. DNA Analysis

    1. Front Matter
      Pages 49-49
    2. M. Carmen Marques, Miguel A. Perez-Amador
      Pages 51-65
    3. Viktor Stein, Miriam Kaltenbach, Florian Hollfelder
      Pages 67-78
    4. Qiang Jing, Andrew McLellan, John M. Greally, Masako Suzuki
      Pages 79-87
  4. RNA Analysis

    1. Front Matter
      Pages 89-89
    2. Pieter Mestdagh, Stefaan Derveaux, Jo Vandesompele
      Pages 121-130
    3. Arjang Hassibi, Haris Vikalo, José Luis Riechmann, Babak Hassibi
      Pages 147-159
  5. Protein Analysis I: Quantification and Identification

    1. Front Matter
      Pages 161-161
    2. Maria Paola Simula, Agata Notarpietro, Giuseppe Toffoli, Valli De Re
      Pages 163-173
    3. Krisztián Papp, József Prechl
      Pages 175-185
    4. Hiroshi Yamaguchi, Masaya Miyazaki, Hideaki Maeda
      Pages 187-198
  6. Protein Analysis II: Functional Characterization

    1. Front Matter
      Pages 227-227
    2. James A. Taylor, Nicolas P. Burton, Anthony Maxwell
      Pages 229-239
    3. Karina Zillner, Moran Jerabek-Willemsen, Stefan Duhr, Dieter Braun, Gernot Längst, Philipp Baaske
      Pages 241-252
    4. María G. Vizoso Pinto, Armin Baiker
      Pages 265-275
    5. Thorsten Stellberger, Roman Häuser, Peter Uetz, Albrecht von Brunn
      Pages 277-288
    6. Nobutaka Nakashima, Shan Goh, Liam Good, Tomohiro Tamura
      Pages 307-319
    7. Harris S. Soifer, Troels Koch, Johnathan Lai, Bo Hansen, Anja Hoeg, Henrik Oerum et al.
      Pages 333-346
  7. Metabolite Analysis

    1. Front Matter
      Pages 361-361
    2. Isvett Josefina Flores-Sanchez, Young Hae Choi, Robert Verpoorte
      Pages 363-375
    3. Manuel Liebeke, Kirsten Dörries, Hanna Meyer, Michael Lalk
      Pages 377-398
  8. Back Matter
    Pages 413-418

About this book

Introduction

Over the last decade Life Science has undergone an accelerated evolution, culminating in the -omics era characterized by the development of a multitude of high throughput methods that are becoming more routinely applied in biochemistry labs. In Functional Genomics: Methods and Protocols, Second Edition expert researchers in the field detail many of the methods which are now commonly used for studies in the life sciences focusing on the dynamic aspects of the transcriptome, proteome and metabolome, respectively.Written in the highly successful Methods in Molecular Biology™ series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key tips on troubleshooting and avoiding known pitfalls.

Authoritative and practical, Functional Genomics: Methods and Protocols, Second Edition seeks to aid scientists in establishing  or extending technologies and techniques in their laboratories.

Keywords

Bioinformatics DNA microarrays Functional Genomics analyzing proteins biochemical target molecules metabolites metabolome proteome transcriptome

Editors and affiliations

  • Michael Kaufmann
    • 1
  • Claudia Klinger
    • 2
  1. 1.School of MedicineWitten/Herdecke UniversityWittenGermany
  2. 2.School of MedicinePrivate Universität Witten/HerdeckeWittenGermany

Bibliographic information

  • DOI https://doi.org/10.1007/978-1-61779-424-7
  • Copyright Information Springer Science+Business Media, LLC 2012
  • Publisher Name Springer, New York, NY
  • eBook Packages Springer Protocols
  • Print ISBN 978-1-61779-423-0
  • Online ISBN 978-1-61779-424-7
  • Series Print ISSN 1064-3745
  • Series Online ISSN 1940-6029
  • Buy this book on publisher's site