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  • © 2008

Structural Proteomics

High-Throughput Methods

  • First book of protocols to cover techniques in a new and emerging field

  • Offers step by step methods and protocols for reproducible lab experiments

  • Each protocol has a Notes section where the major researchers in the field offer tricks and hints of the trade

Part of the book series: Methods in Molecular Biology (MIMB, volume 426)

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Table of contents (39 protocols)

  1. Front Matter

    Pages i-xxvi
  2. Protein Target Selection, Bioinformatic Approaches, and Data Management

    1. Target Selection for Structural Genomics: An Overview

      • Russell L. Marsden, Christine A. Orengo
      Pages 3-25
    2. A General Target Selection Method for Crystallographic Proteomics

      • Gautier Robin, Nathan P. Cowieson, Gregor Guncar, Jade K. Forwood, Pawel Listwan, David A. Hume et al.
      Pages 27-35
    3. Data Management in Structural Genomics: An Overview

      • Sabrina Haquin, Eric Oeuillet, Anne Pajon, Mark Harris, Alwyn T. Jones, Herman van Tilbeurgh et al.
      Pages 49-79
    4. Data Deposition and Annotation at the Worldwide Protein Data Bank

      • Shuchismita Dutta, Kyle Burkhardt, Ganesh J. Swaminathan, Takashi Kosada, Kim Henrick, Haruki Nakamura et al.
      Pages 81-101
    5. Prediction of Protein Disorder

      • Zsuzsanna Dosztányi, Peter Tompa
      Pages 103-115
    6. Protein Domain Prediction

      • Helgi Ingolfsson, Golan Yona
      Pages 117-143
    7. Protein Structure Modeling with MODELLER

      • Narayanan Eswar, David Eramian, Ben Webb, Min-Yi Shen, Andrej Sali
      Pages 145-159
  3. Protein Production

    1. High Throughput Cloning with Restriction Enzymes

      • Volker Sievert, Asgar Ergin, Konrad Büssow
      Pages 163-173
    2. Automated Recombinant Protein Expression Screening in Escherichia coli

      • Didier Busso, Matthieu Stierlé, Jean-Claude Thierry, Dino Moras
      Pages 175-186
    3. From No Expression to High-Level Soluble Expression in Escherichia coli by Screening a Library of the Target Proteins with Randomized N-Termini

      • Kyoung Hoon Kim, Jin Kuk Yang, Geoffrey S. Waldo, Thomas C. Terwilliger, Se Won Suh
      Pages 187-195
    4. A High Throughput Platform for Eukaryotic Genes

      • Yunjia Chen, Shihong Qiu, Chi-Hao Luan, Ming Luo
      Pages 209-220
    5. High Throughput Production of Recombinant Human Proteins for Crystallography

      • Opher Gileadi, Nicola A. Burgess-Brown, Steve M. Colebrook, Georgina Berridge, Pavel Savitsky, Carol E. A. Smee et al.
      Pages 221-246
    6. Cell-Free Protein Synthesis for Analysis by NMR Spectroscopy

      • Margit A. Apponyi, Kiyoshi Ozawa, Nicholas E. Dixon, Gottfried Otting
      Pages 257-268
    7. A Medium or High Throughput Protein Refolding Assay

      • Nathan P. Cowieson, Beth Wensley, Gautier Robin, Gregor Guncar, Jade Forwood, David A. Hume et al.
      Pages 269-275
  4. Biophysical and Functional Characterization of Proteins

About this book

Structural genomics is a newly emerging field that has arisen following the successful footsteps of the major sequencing efforts generally bundled under the heading "genomics". In Structural Proteomics: High Throughput Methods, readers are provided with a current view of all aspects of the 'pipeline' that takes protein targets to structures and how these have been optimized. This volume includes chapters describing in-depth the individual steps in the Structural Genomics pipeline, as well as overviews of individual Structural Genomics initiatives. Topics include Target Selection for structural genomics, Protein structure modeling, High-throughput cloning, Mass Spectrometry modeling. Structural Proteomics: High Throughput Methods, encourages its readers to access further details on the methodologies in on-line resources as well as in cited literature making it an invaluable resource. Most methods in this important book are as amenable to small laboratories as to large consortia, and do not require major investments in facilities. This essential volume provides insight into the diversity of approaches adopted by different laboratories and proves that 'high throughput' is really the defining characteristic of structural genomics.

Reviews

From the reviews:

"This book compiles an impressive array of contributions from a variety of contributors … usually in a format that is accessible to any jobbing structural biologist, or those other molecular biologists with an linking to press their molecular targets into crystal screens or NMR tubes. … In sum, this is a book it is useful to have to hand … ." (Paul C. Driscoll, ChemBioChem, Issue 9, August, 2008)

"This book ... details some of the `tricks of the trade' involved in the field of structural genomics. ... This will be a useful text for laboratories already involved in fields covered in the book who want to increase the number of projects in the lab or for those who want to expand into neighbouring fields." (Darren Thompson, Microbiology Today, November, 2008)

Editors and Affiliations

  • School of Molecular and Microbial Sciences, The University of Queensland, Brisbane, Queensland, Australia

    Bostjan Kobe

  • School of Molecular and Microbial Biosciences, University of Sydney, Sydney, Australia

    Mitchell Guss

  • School of Molecular and Microbial Sciences and Australian Institute for Bioengineering and Nanotechnology, The University of Queensland, Brisbane, Australia

    Thomas Huber

Bibliographic Information

  • Book Title: Structural Proteomics

  • Book Subtitle: High-Throughput Methods

  • Editors: Bostjan Kobe, Mitchell Guss, Thomas Huber

  • Series Title: Methods in Molecular Biology

  • DOI: https://doi.org/10.1007/978-1-60327-058-8

  • Publisher: Humana Totowa, NJ

  • eBook Packages: Springer Protocols

  • Copyright Information: Humana Press 2008

  • Hardcover ISBN: 978-1-58829-809-6Published: 03 March 2008

  • Softcover ISBN: 978-1-61737-789-1Published: 10 December 2010

  • eBook ISBN: 978-1-60327-058-8Published: 10 June 2008

  • Series ISSN: 1064-3745

  • Series E-ISSN: 1940-6029

  • Edition Number: 1

  • Number of Pages: XXVI, 602

  • Number of Illustrations: 120 b/w illustrations, 10 illustrations in colour

  • Topics: Protein Science, Proteomics, Microbial Genetics and Genomics, Bioinformatics, Cell Biology

Buy it now

Buying options

eBook USD 169.00
Price excludes VAT (Canada)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book USD 219.00
Price excludes VAT (Canada)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book USD 219.99
Price excludes VAT (Canada)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Other ways to access