Viral Metagenomics

Front Matter

Host-Associated Bacteriophage Isolation and Preparation for Viral Metagenomics

• Juris A. Grasis

Small RNA Isolation from Tissues of Grapevine and Woody Plants

• Annalisa Giampetruzzi, Michela Chiumenti, Angelantonio Minafra, Pasquale Saldarelli

Double-Stranded RNA-Enriched Preparations to Identify Viroids by Next-Generation Sequencing

• Beatriz Navarro, Francesco Di Serio

Viral Double-Stranded RNAs (dsRNAs) from Plants: Alternative Nucleic Acid Substrates for High-Throughput Sequencing

• Armelle Marais, Chantal Faure, Bernard Bergey, Thierry Candresse

Workup of Human Blood Samples for Deep Sequencing of HIV-1 Genomes

• Marion Cornelissen, Astrid Gall, Antoinette van der Kuyl, Chris Wymant, François Blanquart, Christophe Fraser et al.

Monolith Chromatography as Sample Preparation Step in Virome Studies of Water Samples

• Ion Gutiérrez-Aguirre, Denis Kutnjak, Nejc Rački, Matevž Rupar, Maja Ravnikar

Viral Metagenomics Approaches for High-Resolution Screening of Multiplexed Arthropod and Plant Viral Communities

• Sarah François, Denis Filloux, Emmanuel Fernandez, Mylène Ogliastro, Philippe Roumagnac

Different Approaches to Discover Mycovirus Associated to Marine Organisms

• Luca Nerva, Giovanna C. Varese, Massimo Turina

Use of siRNAs for Diagnosis of Viruses Associated to Woody Plants in Nurseries and Stock Collections

• Nikoletta Czotter, János Molnár, Réka Pesti, Emese Demián, Dániel Baráth, Tünde Varga et al.

The Use of High-Throughput Sequencing for the Study and Diagnosis of Plant Viruses and Viroids in Pollen

• Kris De Jonghe, Annelies Haegeman, Yoika Foucart, Martine Maes

High-Resolution Screening of Viral Communities and Identification of New Pathogens in Fish Using Next-Generation Sequencing

• Arnfinn Lodden Økland, Are Nylund, Ali May, Adalberto Costessi, Walter Pirovano

Metagenomic Analyses of the Viruses Detected in Mycorrhizal Fungi and Their Host Orchid

• Hanako Shimura, Chikara Masuta, Yasunori Koda

DNA Multiple Sequence Alignment Guided by Protein Domains: The MSA-PAD 2.0 Method

• Bachir Balech, Alfonso Monaco, Michele Perniola, Monica Santamaria, Giacinto Donvito, Saverio Vicario et al.

From Whole-Genome Shotgun Sequencing to Viral Community Profiling: The ViromeScan Tool

• Simone Rampelli, Silvia Turroni

Shannon Entropy to Evaluate Substitution Rate Variation Among Viral Nucleotide Positions in Datasets of Viral siRNAs

• Aysan Ghasemzadeh, Marta Małgorzata ter Haar, Masoud Shams-bakhsh, Walter Pirovano, Vitantonio Pantaleo

Insect Virus Discovery by Metagenomic and Cell Culture-Based Approaches

• Finny S. Varghese, Ronald P. van Rij

Erratum to: Shannon Entropy to Evaluate Substitution Rate Variation Among Viral Nucleotide Positions in Datasets of Viral siRNAs

• Aysan Ghasemzadeh, Marta Małgorzata ter Haar, Masoud Shams-bakhsh, Walter Pirovano, Vitantonio Pantaleo

Back Matter