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Bioinformatics of Genome Regulation and Structure

  • Nikolay Kolchanov
  • Ralf Hofestaedt

Table of contents

  1. Front Matter
    Pages I-XV
  2. Computational Genomics

    1. Front Matter
      Pages 1-1
    2. V. G. Levitsky, A. V. Katokhin, O. A. Podkolodnaya, D. P. Furman
      Pages 3-12
    3. D. P. Furman, D. Yu. Oshchepkov, M. A. Pozdnyakov, A. V. Katokhin
      Pages 21-31
    4. J. O. Korbel, H. E. Assmus, S. M. Kielbasa, H. Herzel
      Pages 33-38
    5. F. E. Frenkel, M. B. Chaley, E. V. Korotkov, K. G. Skryabin
      Pages 39-46
    6. Yu. V. Kondrakhin, I. B. Rogozin, T. M. Naykova, N. S. Yudin, M. I. Voevoda, A. G. Romashchenko
      Pages 47-60
    7. O. V. Vishnevsky, E. A. Ananko, E. V. Ignatieva, O. A. Podkolodnaya, I. L. Stepanenko
      Pages 71-80
    8. E. V. Ignatieva, E. A. Ananko, O. A. Podkolodnaya, I. L. Stepanenko, T. M. Khlebodarova, T. I. Merkulova et al.
      Pages 81-91
    9. D. Yu. Oshchepkov, I. I. Turnaev, M. A. Pozdnyakov, L. Milanesi, E. E. Vityaev, N. A. Kolchanov
      Pages 93-102
    10. A. G. Pichueva, A. V. Kochetov, L. Milanesi, Yu. V. Kondrakhin, N. A. Kolchanov
      Pages 125-132
  3. Computational Structural Biology

    1. Front Matter
      Pages 133-133
    2. J. Błażewicz, P. L. Hammer, P. Łukasiak
      Pages 145-154
    3. S. M. Schwarzl, S. Fischer, J. C. Smith
      Pages 179-184
    4. V. A. Ivanisenko, S. S. Pintus, D. A. Grigorovich, L. N. Ivanisenko, V. A. Debelov, A. M. Matsokin
      Pages 185-192
    5. I. I. Titov, A. Yu. Palyanov
      Pages 193-202
    6. S. P. Sidorenko, S. V. Mikhalap, L. M. Shlapatska, M. Y. Yurchenko, Y. M. Akimov, V. F. Chekhun
      Pages 203-210
  4. Computational Evolutionary Biology

  5. System Computational Biology

    1. Front Matter
      Pages 255-255
    2. E. A. Nedosekina, E. A. Ananko, L. Milanesi, V. A. Likhoshvai, N. A. Kolchanov
      Pages 283-292
    3. A. V. Ratushny, E. V. Ignatieva, V. A. Likhoshvai
      Pages 293-300
    4. H. Jönsson, B. E. Shapiro, E. M. Meyerowitz, E. Mjolsness
      Pages 311-318
    5. V. A. Likhoshvai, S. I. Fadeev, Yu. G. Matushkin
      Pages 319-329
    6. Yu. V. Kondrakhin, O. A. Podkolodnaya, A. V. Kochetov, G. N. Erokhin, N. A. Kolchanov
      Pages 331-341
  6. Back Matter
    Pages 343-373

About this book

Introduction

Bioinformatics of Genome Regulation and Structure covers:

-regulatory genomic sequences: databases, knowledge bases, computer analysis, modeling, and recognition;
-large-scale genome analysis and functional annotation;
-gene structure detection and prediction;
-comparative and evolutionary genomics;
-computer analysis of genome polymorphism and evolution; computer analysis and modeling of transcription, splicing, and translation; structural computational biology: structure-function organization of genomic DNA, RNA, and proteins;
-gene networks, signal transduction pathways, and genetically controlled metabolic pathways: principles of organization, operation, and evolution;
-data warehousing, knowledge discovery and data mining; and,
-analysis of basic patterns of genome operation, organization, and evolution.

The data presented may be used while solving a wide range of problems, both basic and applied, in various directions of molecular biology, molecular genetics, biotechnology, pharmacogenetics, pharmacology, and adjacent fields of medicine, veterinary, and agrobiology.

Keywords

ATP DNA Evolution Polysaccharid RNA Translation evolutionary biology genes phylogeny proteins transcription

Editors and affiliations

  • Nikolay Kolchanov
    • 1
  • Ralf Hofestaedt
    • 2
  1. 1.Institute of Cytology & GeneticsSiberian Branch of the Russian Academy of SciencesNovosibirskRussia
  2. 2.Bielefeld UniversityBielefeldGermany

Bibliographic information