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Algorithms in Bioinformatics

Second International Workshop, WABI 2002 Rome, Italy, September 17–21, 2002 Proceedings

  • Roderic Guigó
  • Dan Gusfield

Part of the Lecture Notes in Computer Science book series (LNCS, volume 2452)

Table of contents

  1. Front Matter
    Pages I-X
  2. L. R. Grate, C. Bhattacharyya, M. I. Jordan, I. S. Mian
    Pages 1-9
  3. Miklós Csűrös, Aleksandar Milosavljevic
    Pages 10-28
  4. Romeo Rizzi, Vineet Bafna, Sorin Istrail, Giuseppe Lancia
    Pages 29-43
  5. Russell Schwartz, Andrew G. Clark, Sorin Istrail
    Pages 44-59
  6. Martin Reczko, Petko Fiziev, Eike Staub, Artemis Hatzigeorgiou
    Pages 60-67
  7. Zhi-Zhong Chen, Tao Jiang, Guohui Lin, Jianjun Wen, Dong Xu, Ying Xu
    Pages 82-96
  8. Louxin Zhang, Bin Ma, Lusheng Wang
    Pages 97-111
  9. Aaron L. Halpern, Daniel H. Huson, Knut Reinert
    Pages 126-139
  10. Mariusz Milik, Sandor Szalma, Krzysztof A. Olszewski
    Pages 172-184
  11. Dina Duhovny, Ruth Nussinov, Haim J. Wolfson
    Pages 185-200
  12. Christian N.S. Pedersen, Tejs Scharling
    Pages 220-234
  13. Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson
    Pages 235-250
  14. Luay Nakhleh, Usman Roshan, Lisa Vawter, Tandy Warnow
    Pages 287-299
  15. Yasmine Ajana, Jean-François Lefebvre, Elisabeth R.M. Tillier, Nadia El-Mabrouk
    Pages 300-315
  16. Gene Myers, Richard Durbin
    Pages 331-342
  17. Bernard M.E. Moret, Usman Roshan, Tandy Warnow
    Pages 343-356
  18. H.-W. Leong, F. P. Preparata, W.-K. Sung, H. Willy
    Pages 392-403
  19. Steven Skiena, Sagi Snir
    Pages 404-417
  20. Piotr Berman, Paul Bertone, Bhaskar DasGupta, Mark Gerstein, Ming-Yang Kao, Michael Snyder
    Pages 419-433
  21. A. B. Kahng, I. I. Măndoiu, P. A. Pevzner, S. Reda, A. Z. Zelikovsky
    Pages 435-448
  22. Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch
    Pages 449-463
  23. Anne Bergeron, Sylvie Corteel, Mathieu Raffinot
    Pages 464-476
  24. Doron Lipson, Peter Webb, Zohar Yakhini
    Pages 491-505
  25. Ziv Bar-Joseph, Erik D. Demaine, David K. Gifford, Angèle M. Hamel, Tommi S. Jaakkola, Nathan Srebro
    Pages 506-520
  26. Bernard M. E. Moret, Adam C. Siepel, Jijun Tang, Tao Liu
    Pages 521-536
  27. Roderic D.M. Page
    Pages 537-551
  28. Back Matter
    Pages 553-554

About these proceedings

Introduction

We are pleased to present the proceedings of the Second Workshop on Al- rithms in Bioinformatics (WABI 2002), which took place on September 17-21, 2002 in Rome, Italy. The WABI workshop was part of a three-conference me- ing, which, in addition to WABI, included the ESA and APPROX 2002. The three conferences are jointly called ALGO 2002, and were hosted by the F- ulty of Engineering, University of Rome “La Sapienza”. Seehttp://www.dis. uniroma1.it/˜algo02 for more details. The Workshop on Algorithms in Bioinformatics covers research in all areas of algorithmic work in bioinformatics and computational biology. The emphasis is on discrete algorithms that address important problems in molecular biology, genomics,andgenetics,thatarefoundedonsoundmodels,thatarecomputati- ally e?cient, and that have been implemented and tested in simulations and on real datasets. The goal is to present recent research results, including signi?cant work in progress, and to identify and explore directions of future research. Original research papers (including signi?cant work in progress) or sta- of-the-art surveys were solicited on all aspects of algorithms in bioinformatics, including, but not limited to: exact and approximate algorithms for genomics, genetics, sequence analysis, gene and signal recognition, alignment, molecular evolution, phylogenetics, structure determination or prediction, gene expression and gene networks, proteomics, functional genomics, and drug design.

Keywords

Alignment Proteomics Termination algorithms bioinformatics evolution gene expression genetics genome sequence analysis

Editors and affiliations

  • Roderic Guigó
    • 1
  • Dan Gusfield
    • 2
  1. 1.IMIM-UPF-CRGBarcelonaSpain
  2. 2.Department of Computer ScienceUniversity of CaliforniaDavisUSA

Bibliographic information

  • DOI https://doi.org/10.1007/3-540-45784-4
  • Copyright Information Springer-Verlag Berlin Heidelberg 2002
  • Publisher Name Springer, Berlin, Heidelberg
  • eBook Packages Springer Book Archive
  • Print ISBN 978-3-540-44211-0
  • Online ISBN 978-3-540-45784-8
  • Series Print ISSN 0302-9743
  • Buy this book on publisher's site