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Algorithms in Bioinformatics

5th International Workshop, WABI 2005, Mallorca, Spain, October 3-6, 2005. Proceedings

  • Rita Casadio
  • Gene Myers
Conference proceedings WABI 2005

Part of the Lecture Notes in Computer Science book series (LNCS, volume 3692)

Also part of the Lecture Notes in Bioinformatics book sub series (LNBI, volume 3692)

Table of contents

  1. Front Matter
  2. Expression

    1. Hybrid Methods

      1. Nora Speer, Christian Spieth, Andreas Zell
        Pages 1-12
    2. Time Patterns

      1. Sara C. Madeira, Arlindo L. Oliveira
        Pages 39-52
      2. Tamir Tuller, Efrat Oron, Erez Makavy, Daniel A. Chamovitz, Benny Chor
        Pages 53-64
  3. Phylogeny

    1. Quartets

      1. Chris Christiansen, Thomas Mailund, Christian N. S. Pedersen, Martin Randers
        Pages 77-88
    2. Tree Reconciliation

    3. Clades and Haplotypes

      1. Ganeshkumar Ganapathy, Barbara Goodson, Robert Jansen, Vijaya Ramachandran, Tandy Warnow
        Pages 116-127
      2. Rudi Cilibrasi, Leo van Iersel, Steven Kelk, John Tromp
        Pages 128-139
      3. Pasi Rastas, Mikko Koivisto, Heikki Mannila, Esko Ukkonen
        Pages 140-151
  4. Networks

    1. Sebastian Wernicke
      Pages 165-177
    2. Vincent Lacroix, Cristina G. Fernandes, Marie-France Sagot
      Pages 178-191
    3. Warwick Tucker, Vincent Moulton
      Pages 192-203
  5. Genome Rearrangements

    1. Trasposition Model

    2. Other Models

      1. Sèverine Bérard, Anne Bergeron, Cedric Chauve, Christophe Paul
        Pages 228-238
      2. Rune B. Lyngsø, Yun S. Song, Jotun Hein
        Pages 239-250
  6. Sequences

    1. Strings

      1. Gregory Kucherov, Laurent Noé, Mikhail Roytberg
        Pages 251-263
      2. Henry C. M. Leung, Francis Y. L. Chin
        Pages 264-275
      3. Michael Sammeth, Thomas Weniger, Dag Harmsen, Jens Stoye
        Pages 276-290
    2. Multi-alignment and Clustering

      1. Markus Bauer, Gunnar W. Klau, Knut Reinert
        Pages 303-314
      2. Pankaj K. Agarwal, Yonatan Bilu, Rachel Kolodny
        Pages 315-327
      3. Akshay Vashist, Casimir Kulikowski, Ilya Muchnik
        Pages 328-340
    3. Clustering and Representation

      1. Baharak Rastegari, Anne Condon
        Pages 341-352
      2. Robert S. Boyer, Warren A. Hunt Jr, Serita M. Nelesen
        Pages 353-364
  7. Structure

    1. Threading

      1. P. Veber, N. Yanev, R. Andonov, V. Poirriez
        Pages 365-375
      2. Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai
        Pages 376-388
    2. Folding

      1. Andrew Leaver-Fay, Brian Kuhlman, Jack Snoeyink
        Pages 389-400
      2. Keren Lasker, Oranit Dror, Ruth Nussinov, Haim Wolfson
        Pages 423-434
  8. Back Matter

About these proceedings

Keywords

Alignment algorithm algorithmics algorithms approximation algorithms bioinformatics clustering computational biology data analysis data mining discrete mathematics genetic mapping genome genome analysis pattern searching

Editors and affiliations

  • Rita Casadio
    • 1
  • Gene Myers
    • 2
  1. 1.Biocomputing GroupUniversity of BolognaItaly
  2. 2.Janelia Farm Research Campus, Howard Hughes Medical InstituteAshburnUSA

Bibliographic information

  • DOI https://doi.org/10.1007/11557067
  • Copyright Information Springer-Verlag Berlin Heidelberg 2005
  • Publisher Name Springer, Berlin, Heidelberg
  • eBook Packages Computer Science
  • Print ISBN 978-3-540-29008-7
  • Online ISBN 978-3-540-31812-5
  • Series Print ISSN 0302-9743
  • Series Online ISSN 1611-3349
  • Buy this book on publisher's site