Research in Computational Molecular Biology

9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005. Proceedings

  • Satoru Miyano
  • Jill Mesirov
  • Simon Kasif
  • Sorin Istrail
  • Pavel A. Pevzner
  • Michael Waterman
Conference proceedings RECOMB 2005

Part of the Lecture Notes in Computer Science book series (LNCS, volume 3500)

Also part of the Lecture Notes in Bioinformatics book sub series (LNBI, volume 3500)

Table of contents

  1. Front Matter
  2. Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks

    1. Jacob Scott, Trey Ideker, Richard M. Karp, Roded Sharan
      Pages 1-13
    2. Ariel Jaimovich, Gal Elidan, Hanah Margalit, Nir Friedman
      Pages 14-30
    3. Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Shamir
      Pages 31-47
    4. Mehmet Koyutürk, Ananth Grama, Wojciech Szpankowski
      Pages 48-65
    5. Brendan J. Frey, Quaid D. Morris, Mark Robinson, Timothy R. Hughes
      Pages 66-82
    6. Doron Lipson, Yonatan Aumann, Amir Ben-Dor, Nathan Linial, Zohar Yakhini
      Pages 83-100
  3. Keynote

    1. Dmitri Papatsenko, Mike Levine
      Pages 101-101
  4. Keynote

    1. Susan Lindquist, Ernest Fraenkel, Tiago Outeiro, Aaron Gitler, Julie Su, Anil Cashikar et al.
      Pages 102-102
    2. Kuen-Pin Wu, Jia-Ming Chang, Jun-Bo Chen, Chi-Fon Chang, Wen-Jin Wu, Tai-Huang Huang et al.
      Pages 103-117
    3. Marshall Bern, Jindong Chen, Hao Chi Wong
      Pages 118-132
    4. Chaya Ben-Zaken Zilberstein, Michal Ziv-Ukelson, Ron Y. Pinter, Zohar Yakhini
      Pages 133-151
    5. Can Alkan, Emre Karakoç, Joseph H. Nadeau, S. Cenk Şahinalp, Kaizhong Zhang
      Pages 152-171
    6. Vineet Bafna, Haixu Tang, Shaojie Zhang
      Pages 172-187
  5. Keynote

    1. Charles DeLisi
      Pages 188-188
    2. Kim R. Rasmussen, Jens Stoye, Eugene W. Myers
      Pages 189-203
    3. Sing-Hoi Sze, Yue Lu, Qingwu Yang
      Pages 204-216
    4. Daniel H. Huson, Tobias Klöpper, Pete J. Lockhart, Mike A. Steel
      Pages 233-249
    5. Dannie Durand, Bjarni V. Halldórsson, Benjamin Vernot
      Pages 250-264
    6. Trinh N. D. Huynh, Jesper Jansson, Nguyen Bao Nguyen, Wing-Kin Sung
      Pages 265-280
  6. Keynote

    1. Wolfgang Baumeister
      Pages 281-282
    2. David Burstein, Igor Ulitsky, Tamir Tuller, Benny Chor
      Pages 283-295
    3. Benny Chor, Tamir Tuller
      Pages 296-310
    4. Teresa Przytycka, George Davis, Nan Song, Dannie Durand
      Pages 311-325
    5. Ari Frank, Stephen Tanner, Pavel Pevzner
      Pages 326-341
  7. Keynote

    1. Eric Lander
      Pages 373-373
    2. Samuel S. Gross, Michael R. Brent
      Pages 374-388
    3. S. Sonnenburg, G. Rätsch, C. Schäfer
      Pages 389-407
    4. Yan Liu, Jaime Carbonell, Peter Weigele, Vanathi Gopalakrishnan
      Pages 408-422
    5. Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson
      Pages 440-455
  8. Keynote

    1. Jonathan King, Cammie Haase-Pettingell, Ryan Simkovsky, Peter Weigele
      Pages 472-473
    2. Anton Valouev, Lei Li, Yu-Chi Liu, David C. Schwartz, Yi Yang, Yu Zhang et al.
      Pages 489-504
  9. Keynote

    1. Chen-Hsiang Yeang, Tommi Jaakkola
      Pages 506-521
    2. Tommy Kaplan, Nir Friedman, Hanah Margalit
      Pages 522-537
    3. Manuel Middendorf, Anshul Kundaje, Mihir Shah, Yoav Freund, Chris H. Wiggins, Christina Leslie
      Pages 538-552
    4. Eran Halperin, Elad Hazan
      Pages 553-568
    5. Vineet Bafna, Vikas Bansal
      Pages 569-584
    6. Zhihong Ding, Vladimir Filkov, Dan Gusfield
      Pages 585-600
  10. Keynote

    1. Anne Bergeron, Julia Mixtacki, Jens Stoye
      Pages 615-629
  11. Back Matter

About these proceedings


This volume contains the papers presented at the 9th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2005), which was held in Cambridge, Massachusetts, on May 14–18, 2005. The RECOMB conference series was started in 1997 by Sorin Istrail, Pavel Pevzner and Michael Waterman. The list of previous meetings is shown below in the s- tion “Previous RECOMB Meetings. ” RECOMB 2005 was hosted by the Broad Institute of MIT and Harvard, and Boston University’s Center for Advanced - nomic Technology, and was excellently organized by the Organizing Committee Co-chairs Jill Mesirov and Simon Kasif. This year, 217 papers were submitted, of which the Program Committee - lected 39 for presentation at the meeting and inclusion in this proceedings. Each submission was refereed by at least three members of the Program Committee. After the completion of the referees’ reports, an extensive Web-based discussion took place for making decisions. From RECOMB 2005, the Steering Committee decided to publish the proceedings as a volume of Lecture Notes in Bioinf- matics (LNBI) for which the founders of RECOMB are also the editors. The prominent volume number LNBI 3500 was assigned to this proceedings. The RECOMB conference series is closely associated with the Journal of Compu- tional Biology which traditionally publishes special issues devoted to presenting full versions of selected conference papers. The RECOMB Program Committee consistedof42members,aslistedonaseparatepage. Iwouldliketothank the RECOMB 2005 Program Committee members for their dedication and hard work.


Annotation Microarray Resolution algorithms bioinformatics calculus cognition computational biology computational graph theory computational molecular biology genome haplotype data analysis pattern matching protein fold recognition protein interaction networks

Editors and affiliations

  • Satoru Miyano
    • 1
  • Jill Mesirov
    • 2
  • Simon Kasif
    • 3
  • Sorin Istrail
    • 4
  • Pavel A. Pevzner
    • 5
  • Michael Waterman
    • 6
  1. 1.Human Genome Center, Institute of Medical ScienceUniversity of TokyoMinato-ku, TokyoJapan
  2. 2.Broad Institute of MIT and HarvardCambridgeUSA
  3. 3.Computational Genomics Laboratory, Department of BioengineeringBoston UniversityBostonUSA
  4. 4.Center for Molecular Biology and Computer Sciecne DepartmentBrown UniversityProvidenceUSA
  5. 5.University of CaliforniaSan DiegoUSA
  6. 6.Department of Molecular and Computational BiologyUniversity of Southern CaliforniaLos AngelesUSA

Bibliographic information