Book 2003

Methods of Microarray Data Analysis III

Papers from CAMDA’ 02

Editors:

ISBN: 978-1-4020-7582-7 (Print) 978-0-306-48354-7 (Online)

Table of contents (16 chapters)

  1. Front Matter

    Pages i-xi

  2. No Access

    Chapter

    Pages 1-1

    Introduction

  3. Tutorials

    1. No Access

      Chapter

      Pages 9-24

      The Biology behind Gene Expression: A Basic Tutorial

    2. No Access

      Chapter

      Pages 25-40

      Monitoring the Quality of Microarray Experiments

    3. No Access

      Chapter

      Pages 41-55

      Outliers in Microarray Data Analysis

  4. Best Presentation Award

    1. No Access

      Chapter

      Pages 59-72

      Organ-Specific Differences in Gene Expression and Unigene Annotations Describing Source Material

  5. Analyzing Images

    1. No Access

      Chapter

      Pages 75-91

      Characterization, Modeling, and Simulation of Mouse Microarray Data

    2. No Access

      Chapter

      Pages 93-101

      Topological Adjustments to Genechip Expression Values

  6. Normalizing Raw Data

    1. No Access

      Chapter

      Pages 105-121

      Comparison of Normalization Methods for cDNA Microarrays

  7. Characterizing Technical and Biological Variance

    1. No Access

      Chapter

      Pages 125-137

      Simultaneous Assessment of Transcriptomic Variability and Tissue Effects in the Normal Mouse

    2. No Access

      Chapter

      Pages 139-154

      How Many Mice and How Many Arrays? Replication in Mouse cDNA Microarray Experiments

    3. No Access

      Chapter

      Pages 155-172

      Bayesian Characterization of Natural Variation in Gene Expression

  8. Investigating Cross Hybridization on Oligonucleotide Microarrays

    1. No Access

      Chapter

      Pages 175-184

      Quantification of Cross Hybridization on Oligonucleotide Microarrays

    2. No Access

      Chapter

      Pages 185-198

      Assessing the Potential Effect of Cross-Hybridization on Oligonucleotide Microarrays

    3. No Access

      Chapter

      Pages 199-208

      Who Are Those Strangers in the Latin Square?

  9. Finding Patterns and Seeking Biological Explanations

    1. No Access

      Chapter

      Pages 211-231

      Bayesian Decomposition Classification of the Project Normal Data Set

    2. No Access

      Chapter

      Pages 233-247

      The Use of Go Terms to Understand the Biological Significance of Microarray Differential Gene Expression Data

  10. Back Matter

    Pages 249-252