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Analysis of Single-Cell Data

ODE Constrained Mixture Modeling and Approximate Bayesian Computation

  • Carolin Loos
Book
  • 3.4k Downloads

Part of the BestMasters book series (BEST)

Table of contents

  1. Front Matter
    Pages I-XXI
  2. Carolin Loos
    Pages 1-3
  3. Carolin Loos
    Pages 5-14
  4. Carolin Loos
    Pages 85-86
  5. Back Matter
    Pages 87-92

About this book

Introduction

Carolin Loos introduces two novel approaches for the analysis of single-cell data. Both approaches can be used to study cellular heterogeneity and therefore advance a holistic understanding of biological processes. The first method, ODE constrained mixture modeling, enables the identification of subpopulation structures and sources of variability in single-cell snapshot data. The second method estimates parameters of single-cell time-lapse data using approximate Bayesian computation and is able to exploit the temporal cross-correlation of the data as well as lineage information.

Contents

  • Modeling and Parameter Estimation for Single-Cell Data
  • ODE Constrained Mixture Modeling for Multivariate Data
  • Approximate Bayesian Computation Using Multivariate Statistics

Target Groups

    Researchers and students in the fields of (bio-)mathematics, statistics, bioinformatics
  • System biologists, biostatisticians, bioinformaticians

The Author
Carolin Loos is currently doing her PhD at the Institute of Computational Biology at the Helmholtz Zentrum München. She is member of the junior research group „Data-driven Computational Modeling“.


Keywords

Parameter Estimation Heterogeneity Subpopulation Identification Multivariate Data Time-Lapse Data Snapshot Data

Authors and affiliations

  • Carolin Loos
    • 1
  1. 1.Helmholtz Zentrum MünchenInstitute of Computational BiologyMünchenGermany

Bibliographic information