Research in Computational Molecular Biology

12th Annual International Conference, RECOMB 2008, Singapore, March 30 - April 2, 2008. Proceedings

  • Editors
  • Martin Vingron
  • Limsoon Wong
Conference proceedings RECOMB 2008

Part of the Lecture Notes in Computer Science book series (LNCS, volume 4955)

Also part of the Lecture Notes in Bioinformatics book sub series (LNBI, volume 4955)

Table of contents

  1. Front Matter
    PDF
  2. Computational Biology: Its Challenges Past, Present, and Future
    Temple F. Smith
    Pages 1-2
  3. Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast
    Caroline C. Friedel, Jan Krumsiek, Ralf Zimmer
    Pages 3-16
  4. CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads
    Sourav Chatterji, Ichitaro Yamazaki, Zhaojun Bai, Jonathan A. Eisen
    Pages 17-28
  5. Reconstructing the Evolutionary History of Complex Human Gene Clusters
    Yu Zhang, Giltae Song, Tomáš Vinař, Eric D. Green, Adam Siepel, Webb Miller
    Pages 29-49
  6. Ab Initio Whole Genome Shotgun Assembly with Mated Short Reads
    Paul Medvedev, Michael Brudno
    Pages 50-64
  7. Orchestration of DNA Methylation
    Howard Cedar
    Pages 65-65
  8. BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes
    Tien-ho Lin, Pradipta Ray, Geir K. Sandve, Selen Uguroglu, Eric P. Xing
    Pages 66-81
  9. A Combined Expression-Interaction Model for Inferring the Temporal Activity of Transcription Factors
    Yanxin Shi, Itamar Simon, Tom Mitchell, Ziv Bar-Joseph
    Pages 82-97
  10. A Fast, Alignment-Free, Conservation-Based Method for Transcription Factor Binding Site Discovery
    Raluca Gordân, Leelavati Narlikar, Alexander J. Hartemink
    Pages 98-111
  11. The Statistical Power of Phylogenetic Motif Models
    John Hawkins, Timothy L. Bailey
    Pages 112-126
  12. Transcriptional Regulation and Cancer Genomics
    Edison Liu
    Pages 127-127
  13. Automatic Recognition of Cells (ARC) for 3D Images of C. elegans
    Fuhui Long, Hanchuan Peng, Xiao Liu, Stuart Kim, Gene Myers
    Pages 128-139
  14. Spectrum Fusion: Using Multiple Mass Spectra for De Novo Peptide Sequencing
    Ritendra Datta, Marshall Bern
    Pages 140-153
  15. A Fragmentation Event Model for Peptide Identification by Mass Spectrometry
    Yu Lin, Yantao Qiao, Shiwei Sun, Chungong Yu, Gongjin Dong, Dongbo Bu
    Pages 154-166
  16. A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics
    Yong Fuga Li, Randy J. Arnold, Yixue Li, Predrag Radivojac, Quanhu Sheng, Haixu Tang
    Pages 167-180
  17. De Novo Sequencing of Nonribosomal Peptides
    Nuno Bandeira, Julio Ng, Dario Meluzzi, Roger G. Linington, Pieter Dorrestein, Pavel A. Pevzner
    Pages 181-195
  18. Systems Metabolic Engineering
    Sang Yup Lee
    Pages 196-196
  19. Protein Function Prediction Based on Patterns in Biological Networks
    Mustafa Kirac, Gultekin Ozsoyoglu
    Pages 197-213
  20. Automatic Parameter Learning for Multiple Network Alignment
    Jason Flannick, Antal Novak, Chuong B. Do, Balaji S. Srinivasan, Serafim Batzoglou
    Pages 214-231

About these proceedings

Keywords

DNA sequence motifs algorithm algorithms bioinformatics computational biology computational proteomics comutational molecular biology feature extraction gene transfer genome genome data analysis genome signatures optimization origin of life sequence analysis

Bibliographic information

  • DOI https://doi.org/10.1007/978-3-540-78839-3
  • Copyright Information Springer-Verlag Berlin Heidelberg 2008
  • Publisher Name Springer, Berlin, Heidelberg
  • eBook Packages Computer Science
  • Print ISBN 978-3-540-78838-6
  • Online ISBN 978-3-540-78839-3
  • Series Print ISSN 0302-9743
  • Series Online ISSN 1611-3349
  • About this book