Systems Biology and Computational Proteomics

Joint RECOMB 2006 Satellite Workshops on Systems Biology and on Computational Proteomics, San Diego, CA, USA, December 1-3, 2006, Revised Selected Papers

  • Editors
  • Trey Ideker
  • Vineet Bafna
Conference proceedings

Part of the Lecture Notes in Computer Science book series (LNCS, volume 4532)

Also part of the Lecture Notes in Bioinformatics book sub series (LNBI, volume 4532)

Table of contents

  1. Front Matter
    PDF
  2. Not All Scale Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Emulation
    Fereydoun Hormozdiari, Petra Berenbrink, Nataša Pržulj, Cenk Sahinalp
    Pages 1-13
  3. Probabilistic Paths for Protein Complex Inference
    Hailiang Huang, Lan V. Zhang, Frederick P. Roth, Joel S. Bader
    Pages 14-28
  4. Markov Additive Chains and Applications to Fragment Statistics for Peptide Mass Fingerprinting
    Hans-Michael Kaltenbach, Sebastian Böcker, Sven Rahmann
    Pages 29-41
  5. A Context-Specific Network of Protein-DNA and Protein-Protein Interactions Reveals New Regulatory Motifs in Human B Cells
    Celine Lefebvre, Wei Keat Lim, Katia Basso, Riccardo Dalla Favera, Andrea Califano
    Pages 42-56
  6. Identification and Evaluation of Functional Modules in Gene Co-expression Networks
    Jianhua Ruan, Weixiong Zhang
    Pages 57-76
  7. A Linear Discrete Dynamic System Model for Temporal Gene Interaction and Regulatory Network Influence in Response to Bioethanol Conversion Inhibitor HMF for Ethanologenic Yeast
    Mingzhou (Joe) Song, Z. Lewis Liu
    Pages 77-95
  8. A Computational Approach for the Identification of Site-Specific Protein Glycosylations Through Ion-Trap Mass Spectrometry
    Yin Wu, Yehia Mechref, Iveta Klouckova, Milos V. Novotny, Haixu Tang
    Pages 96-107
  9. De Novo Signaling Pathway Predictions Based on Protein-Protein Interaction, Targeted Therapy and Protein Microarray Analysis
    Derek Ruths, Jen-Te Tseng, Luay Nakhleh, Prahlad T. Ram
    Pages 108-118
  10. Alignment of Mass Spectrometry Data by Clique Finding and Optimization
    Daniel Fasulo, Anne-Katrin Emde, Lu-Yong Wang, Karin Noy, Nathan Edwards
    Pages 119-129
  11. Back Matter
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About these proceedings

Keywords

Alignment Microarray bioinformatics biology calculus classification clustering combinatorial regulation comparative genomics computational biology computational genomics data analysis genome optimization statistics

Bibliographic information

  • DOI https://doi.org/10.1007/978-3-540-73060-6
  • Copyright Information Springer-Verlag Berlin Heidelberg 2007
  • Publisher Name Springer, Berlin, Heidelberg
  • eBook Packages Computer Science
  • Print ISBN 978-3-540-73059-0
  • Online ISBN 978-3-540-73060-6
  • Series Print ISSN 0302-9743
  • Series Online ISSN 1611-3349
  • About this book