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Simulation Algorithms for Computational Systems Biology

  • Luca Marchetti
  • Corrado Priami
  • Vo Hong Thanh

Table of contents

  1. Front Matter
    Pages i-xi
  2. Luca Marchetti, Corrado Priami, Vo Hong Thanh
    Pages 1-6
  3. Luca Marchetti, Corrado Priami, Vo Hong Thanh
    Pages 7-28
  4. Luca Marchetti, Corrado Priami, Vo Hong Thanh
    Pages 29-112
  5. Luca Marchetti, Corrado Priami, Vo Hong Thanh
    Pages 113-179
  6. Luca Marchetti, Corrado Priami, Vo Hong Thanh
    Pages 181-205
  7. Back Matter
    Pages 207-238

About this book

Introduction

This book explains the state-of-the-art algorithms used to simulate biological dynamics. Each technique is theoretically introduced and applied to a set of modeling cases. Starting from basic simulation algorithms, the book also introduces more advanced techniques that support delays, diffusion in space, or that are based on hybrid simulation strategies.

This is a valuable self-contained resource for graduate students and practitioners in computer science, biology and bioinformatics. An appendix covers the mathematical background, and the authors include further reading sections in each chapter.

Keywords

Computational Systems Biology Deterministic Simulation Hybrid Simulation Reaction-Diffusion Simulation Stochastic Simulation

Authors and affiliations

  • Luca Marchetti
    • 1
  • Corrado Priami
    • 2
  • Vo Hong Thanh
    • 3
  1. 1.COSBIThe Microsoft Research – University of Trento Centre for Computational and Systems BiologyRoveretoItaly
  2. 2.COSBIThe Microsoft Research – University of Trento Centre for Computational and Systems BiologyRoveretoItaly
  3. 3.COSBIThe Microsoft Research – University of Trento Centre for Computational and Systems BiologyRoveretoItaly

Bibliographic information

  • DOI https://doi.org/10.1007/978-3-319-63113-4
  • Copyright Information Springer International Publishing AG 2017
  • Publisher Name Springer, Cham
  • eBook Packages Computer Science
  • Print ISBN 978-3-319-63111-0
  • Online ISBN 978-3-319-63113-4
  • Series Print ISSN 1862-4499
  • Buy this book on publisher's site