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Bioinformatics and Biomedical Engineering

Third International Conference, IWBBIO 2015, Granada, Spain, April 15-17, 2015. Proceedings, Part II

  • Francisco Ortuño
  • Ignacio Rojas
Conference proceedings IWBBIO 2015

Part of the Lecture Notes in Computer Science book series (LNCS, volume 9044)

Also part of the Lecture Notes in Bioinformatics book sub series (LNBI, volume 9044)

Table of contents

  1. Front Matter
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  2. eHealth

    1. e-Health Informed Foreign Patient and Physician Communication: The Perspective of Informed Consent
      Echo Huang, Shao-Fu Liao, Shing-Lung Chen
      Pages 1-11
    2. Empirical Analysis of the Effect of eHealth on Medical Expenditures of Patients with Chronic Diseases
      Masatsugu Tsuji, Sheikh Taher Abu, Yusuke Kinai
      Pages 12-23
    3. Impact of Health Apps in Health and Computer Science Publications. A Systematic Review from 2010 to 2014
      Guillermo Molina-Recio, Laura García-Hernández, Antonio Castilla-Melero, Juan M. Palomo-Romero, Rafael Molina-Luque, Antonio A. Sánchez-Muñoz et al.
      Pages 24-34
    4. Automated Extraction of Food Intake Indicators from Continuous Meal Weight Measurements
      Vasileios Papapanagiotou, Christos Diou, Billy Langlet, Ioannis Ioakimidis, Anastasios Delopoulos
      Pages 35-46
    5. System Development Ontology to Discover Lifestyle Patterns Associated with NCD
      María J. Somodevilla, M. Concepción Pérez de Celis, Ivo H. Pineda, Luis E. Colmenares, Ismael Mena
      Pages 47-56
    6. USSD Technology a Low Cost Asset in Complementing Public Health Workers’ Work Processes
      Munyaradzi Zhou, Marlien Herselman, Alfred Coleman
      Pages 57-64
    7. Energy Efficiency Study of Representative Microcontrollers for Wearable Electronics
      Gregor Rebel, Francisco J. Estevez, Peter Gloesekoetter
      Pages 65-76
    8. Analysis of Inter-rater Reliability of the Mammography Assessment after Image Processing
      Kemal Turhan, Burçin Kurt, Sibel Kul, Aslı Yazağan
      Pages 77-84
    9. A LOD-Based Service for Extracting Linked Open Emergency Healthcare Data
      Mikaela Poulymenopoulou, Flora Malamateniou, George Vassilacopoulos
      Pages 85-92
    10. Development of an Auditory Cueing System to Assist Gait in Patients with Parkinson’s Disease
      Vânia Guimarães, Rui Castro, Ana Barros, João Cevada, Àngels Bayés, Sheila Garcá et al.
      Pages 93-104
    11. Linear Accelerator Bunkers: Shielding Verification
      Khaled Sayed Ahmed, Shereen M. El-Metwally
      Pages 105-113
    12. New IT Tools and Methods Improving Lifestyle of Young People
      Alexandru Serban, Mihaela Crisan-Vida, Maria-Corina Serban, Lacramioara Stoicu-Tivadar
      Pages 114-122
    13. XTENS - A JSON-Based Digital Repository for Biomedical Data Management
      Massimiliano Izzo, Gabriele Arnulfo, Maria Carla Piastra, Valentina Tedone, Luigi Varesio, Marco Massimo Fato
      Pages 123-130
    14. An Innovative Platform for Person-Centric Health and Wellness Support
      Oresti Banos, Muhammad Bilal Amin, Wajahat Ali Khan, Muhammad Afzel, Mahmood Ahmad, Maqbool Ali et al.
      Pages 131-140
    15. An Ontology for Dynamic Sensor Selection in Wearable Activity Recognition
      Claudia Villalonga, Oresti Banos, Hector Pomares, Ignacio Rojas
      Pages 141-152
    16. Proposal for Interoperability Standards Applications in the Health Sector
      Alejandro Paolo Daza, Brayan S. Reyes Daza, Octavio J. Salcedo Parra
      Pages 153-164
    17. An Event-Driven Architecture for Biomedical Data Integration and Interoperability
      Pedro Lopes, José Luís Oliveira
      Pages 165-174

  3. Next Generation Sequencing and Sequence Analysis

    1. Local Search for Multiobjective Multiple Sequence Alignment
      Maryam Abbasi, Luís Paquete, Francisco B. Pereira
      Pages 175-182
    2. Alignment Free Frequency Based Distance Measures for Promoter Sequence Comparison
      Kouser, Lalitha Rangarajan, Darshan S. Chandrashekar, K. Acharya Kshitish, Emin Mary Abraham
      Pages 183-193
    3. Energy-Efficient Architecture for DP Local Sequence Alignment: Exploiting ILP and DLP
      Miguel Tairum Cruz, Pedro Tomás, Nuno Roma
      Pages 194-206
    4. Hierarchical Assembly of Pools
      Riccardo Vicedomini, Francesco Vezzi, Simone Scalabrin, Lars Arvestad, Alberto Policriti
      Pages 207-218
    5. SimpLiSMS: A Simple, Lightweight and Fast Approach for Structured Motifs Searching
      Ali Alatabbi, Shuhana Azmin, Md. Kawser Habib, Costas S. Iliopoulos, M. Sohel Rahman
      Pages 219-230

  4. Quantitative and Systems Pharmacology

    1. Successes and Pitfalls in Scoring Molecular Interactions
      Heloisa S. Muniz, Alessandro S. Nascimento
      Pages 231-237
    2. The Use of Random Forest to Predict Binding Affinity in Docking
      Hongjian Li, Kwong-Sak Leung, Man-Hon Wong, Pedro J. Ballester
      Pages 238-247

  5. Hidden Markov Model (HMM) for Biological Sequence Modeling

    1. Strong Inhomogeneity in Triplet Distribution Alongside a Genome
      Michael Sadovsky, Xenia Nikitina
      Pages 248-255
    2. Predicting Sub-cellular Location of Proteins Based on Hierarchical Clustering and Hidden Markov Models
      Jorge Alberto Jaramillo-Garzón, Jacobo Castro-Ceballos, Germán Castellanos-Dominguez
      Pages 256-263

  6. Advances in Computational Intelligence for Bioinformatics and Biomedicine

    1. Risk Quantification of Multigenic Conditions for SNP Array Based Direct-to-Consumer Genomic Services
      Svetlana Bojić, Stefan Mandić-Rajčević
      Pages 264-275
    2. Computational Inference in Systems Biology
      Benn Macdonald, Dirk Husmeier
      Pages 276-288
    3. A Price We Pay for Inexact Dimensionality Reduction
      Sarunas Raudys, Vytautas Valaitis, Zidrina Pabarskaite, Gene Biziuleviciene
      Pages 289-300
    4. An Ensemble of Cooperative Parallel Metaheuristics for Gene Selection in Cancer Classification
      Anouar Boucheham, Mohamed Batouche, Souham Meshoul
      Pages 301-312

  7. Tools for Next Generation Sequencing Data Analysis

    1. DEgenes Hunter - A Self-customised Gene Expression Analysis Workflow for Non-model Organisms
      Isabel González Gayte, Rocío Bautista Moreno, M. Gonzalo Claros
      Pages 313-321
    2. Bioinformatics Analyses to Separate Species Specific mRNAs from Unknown Sequences in de novo Assembled Transcriptomes
      David Velasco, Pedro Seoane, M. Gonzalo Claros
      Pages 322-332
    3. Evaluation of Combined Genome Assemblies: A Case Study with Fungal Genomes
      Mostafa M. Abbas, Ponnuraman Balakrishnan, Qutaibah M. Malluhi
      Pages 333-344
    4. Using Multivariate Analysis and Bioinformatic Tools to Elucidate the Functions of a Cyanobacterial Global Regulator from RNA-Seq Data Obtained in Different Genetic and Environmental Backgrounds
      José I. Labella, Francisco Rodríguez-Mateos, Javier Espinosa, Asunción Contreras
      Pages 345-354
    5. HvDBase: A Web Resource on Hydra Vulgaris Transcriptome
      Daniela Evangelista, Kumar Parijat Tripathi, Valentina Scuotto, Mario Rosario Guarracino
      Pages 355-362
    6. Nucleotide Sequence Alignment and Compression via Shortest Unique Substring
      Boran Adaş, Ersin Bayraktar, Simone Faro, Ibraheem Elsayed Moustafa, M. Oguzhan Külekci
      Pages 363-374

  8. Dynamics Networks in System Medicine

    1. Modeling of the Urothelium with an Agent Based Approach
      Angelo Torelli, Fabian Siegel, Philipp Erben, Markus Gumbel
      Pages 375-385
    2. Systematic Comparison of Machine Learning Methods for Identification of miRNA Species as Disease Biomarkers
      Chihiro Higuchi, Toshihiro Tanaka, Yukinori Okada
      Pages 386-394
    3. Numerical Investigation of Graph Spectra and Information Interpretability of Eigenvalues
      Hector Zenil, Narsis A. Kiani, Jesper Tegnér
      Pages 395-405

  9. Interdisciplinary Puzzles of Measurements in Biological Systems

    1. Mixture Model Based Efficient Method for Magnetic Resonance Spectra Quantification
      Franciszek Binczyk, Michal Marczyk, Joanna Polanska
      Pages 406-417
    2. Noise and Baseline Filtration in Mass Spectrometry
      Jan Urban, Dalibor Štys
      Pages 418-425
    3. BioWes – From Design of Experiment, through Protocol to Repository, Control, Standardization and Back-Tracking
      Antonín Bárta, Petr Císař, Dmytro Soloviov, Pavel Souček, Dalibor Štys, Štěpán Papáček et al.
      Pages 426-430
    4. Measurement in Biological Systems from the Self-organisation Point of View
      Dalibor Štys, Jan Urban, Renata Rychtáriková, Anna Zhyrova, Petr Císař
      Pages 431-443
    5. FRAP & FLIP: Two Sides of the Same Coin?
      Štěpán Papáček, Jiři Jablonský, Ctirad Matonoha, Radek Kaňa, Stefan Kindermann
      Pages 444-455

  10. Biological Networks: Insight from Interactions

    1. MicroRNA Target Prediction Based Upon Metastable RNA Secondary Structures
      Ouala Abdelhadi Ep Souki, Luke Day, Andreas A. Albrecht, Kathleen Steinhöfel
      Pages 456-467
    2. Inference of Circadian Regulatory Pathways Based on Delay Differential Equations
      Catherine F. Higham, Dirk Husmeier
      Pages 468-478

  11. Towards an Effective Telemedicine: An Interdisciplinary Approach

    1. Simplifying Tele-rehabilitation Devices for Their Practical Use in Non-clinical Environments
      Daniel Cesarini, Davide Calvaresi, Mauro Marinoni, Paquale Buonocunto, Giorgio Buttazzo
      Pages 479-490
    2. Non-intrusive Patient Monitoring for Supporting General Practitioners in Following Diseases Evolution
      Davide Calvaresi, Daniel Cesarini, Mauro Marinoni, Paquale Buonocunto, Stefania Bandinelli, Giorgio Buttazzo
      Pages 491-501
    3. Interactive Business Models for Telerehabilitation after Total Knee Replacement
      Francesco Fusco, Giuseppe Turchetti
      Pages 502-511

Other volumes

  1. Bioinformatics and Biomedical Engineering
    Third International Conference, IWBBIO 2015, Granada, Spain, April 15-17, 2015, Proceedings, Part I
  2. Bioinformatics and Biomedical Engineering
    Third International Conference, IWBBIO 2015, Granada, Spain, April 15-17, 2015. Proceedings, Part II

About these proceedings

Introduction

The two volume set LNCS 9043 and 9044 constitutes the refereed proceedings of the Third International Conference on Bioinformatics and Biomedical Engineering, IWBBIO 2015, held in Granada, Spain in April 2015.
The 135 papers presented were carefully reviewed and selected from 268 submissions. The scope of the conference spans the following areas: bioinformatics for healthcare and diseases, biomedical engineering, biomedical image analysis, biomedical signal analysis, computational genomics, computational proteomics, computational systems for modelling biological processes, eHealth, next generation sequencing and sequence analysis, quantitative and systems pharmacology, Hidden Markov Model (HMM) for biological sequence modeling, advances in computational intelligence for bioinformatics and biomedicine, tools for next generation sequencing data analysis, dynamics networks in system medicine, interdisciplinary puzzles of measurements in biological systems, biological networks, high performance computing in bioinformatics, computational biology and computational chemistry, advances in drug discovery, and ambient intelligence for bioemotional computing.

Keywords

Bioinformatics Biomedical engineering Biomedicine Computational biology Computational genomics Computational proteomics Health care information systems Health informatics Healthcare Image analysis Image processing Life and medical sciences Machine learning Medical technologies Metabolomics Metabonomics Recognition of genes and regulatory elements Signal processing Systems biology e-health

Editors and affiliations

  • Francisco Ortuño
    • 1
  • Ignacio Rojas
    • 2
  1. 1.Universidad de Granada. , Dpto. de Arquitectura y Tecnología de Computadores (ATC)., E.T.S. de Ingenierías en Informática y Telecomunicación. CITIC-UGR.,, , c/ Periodista Daniel Saucedo Aranda s/n, , 18071, Granada, , Spain
  2. 2.Universidad de Granada, E.T.S. Ingenierías Informática y de Telecomunicación , , Dpto. Arquitectura y Tecnología de Computadores, CITIC-UGR, , , C Periodista Rafael Gómez Montero , , 18071, Granada,Spain

Bibliographic information

  • DOI https://doi.org/10.1007/978-3-319-16480-9
  • Copyright Information Springer International Publishing Switzerland 2015
  • Publisher Name Springer, Cham
  • eBook Packages Computer Science
  • Print ISBN 978-3-319-16479-3
  • Online ISBN 978-3-319-16480-9
  • Series Print ISSN 0302-9743
  • Series Online ISSN 1611-3349
  • Buy this book on publisher's site