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© 2014

Research in Computational Molecular Biology

18th Annual International Conference, RECOMB 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings

  • Roded Sharan
Conference proceedings RECOMB 2014

Part of the Lecture Notes in Computer Science book series (LNCS, volume 8394)

Also part of the Lecture Notes in Bioinformatics book sub series (LNBI, volume 8394)

Table of contents

  1. Front Matter
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  2. Tractatus: An Exact and Subquadratic Algorithm for Inferring Identical-by-Descent Multi-shared Haplotype Tracts
    Derek Aguiar, Eric Morrow, Sorin Istrail
    Pages 1-17
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  3. HapTree: A Novel Bayesian Framework for Single Individual Polyplotyping Using NGS Data
    Emily Berger, Deniz Yorukoglu, Jian Peng, Bonnie Berger
    Pages 18-19
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  4. Changepoint Analysis for Efficient Variant Calling
    Adam Bloniarz, Ameet Talwalkar, Jonathan Terhorst, Michael I. Jordan, David Patterson, Bin Yu et al.
    Pages 20-34
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  5. On the Representation of de Bruijn Graphs
    Rayan Chikhi, Antoine Limasset, Shaun Jackman, Jared T. Simpson, Paul Medvedev
    Pages 35-55
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  6. Exact Learning of RNA Energy Parameters from Structure
    Hamidreza Chitsaz, Mohammad Aminisharifabad
    Pages 56-68
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  7. An Alignment-Free Regression Approach for Estimating Allele-Specific Expression Using RNA-Seq Data
    Chen-Ping Fu, Vladimir Jojic, Leonard McMillan
    Pages 69-84
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  8. The Generating Function Approach for Peptide Identification in Spectral Networks
    Adrian Guthals, Christina Boucher, Nuno Bandeira
    Pages 85-99
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  9. Decoding Coalescent Hidden Markov Models in Linear Time
    Kelley Harris, Sara Sheehan, John A. Kamm, Yun S. Song
    Pages 100-114
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  10. AptaCluster – A Method to Cluster HT-SELEX Aptamer Pools and Lessons from Its Application
    Jan Hoinka, Alexey Berezhnoy, Zuben E. Sauna, Eli Gilboa, Teresa M. Przytycka
    Pages 115-128
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  11. Learning Sequence Determinants of Protein: Protein Interaction Specificity with Sparse Graphical Models
    Hetunandan Kamisetty, Bornika Ghosh, Christopher James Langmead, Chris Bailey-Kellogg
    Pages 129-143
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  12. On Sufficient Statistics of Least-Squares Superposition of Vector Sets
    Arun S. Konagurthu, Parthan Kasarapu, Lloyd Allison, James H. Collier, Arthur M. Lesk
    Pages 144-159
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  13. IDBA-MTP: A Hybrid MetaTranscriptomic Assembler Based on Protein Information
    Henry C. M. Leung, S. M. Yiu, Francis Y. L. Chin
    Pages 160-172
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  14. MRFalign: Protein Homology Detection through Alignment of Markov Random Fields
    Jianzhu Ma, Sheng Wang, Zhiyong Wang, Jinbo Xu
    Pages 173-174
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  15. An Integrated Model of Multiple-Condition ChIP-Seq Data Reveals Predeterminants of Cdx2 Binding
    Shaun Mahony, Matthew D. Edwards, Esteban O. Mazzoni, Richard I. Sherwood, Akshay Kakumanu, Carolyn A. Morrison et al.
    Pages 175-176
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  16. PASTA: Ultra-Large Multiple Sequence Alignment
    Siavash Mirarab, Nam Nguyen, Tandy Warnow
    Pages 177-191
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  17. Fast Flux Module Detection Using Matroid Theory
    Arne C. Müller, Frank J. Bruggeman, Brett G. Olivier, Leen Stougie
    Pages 192-206
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  18. Building a Pangenome Reference for a Population
    Ngan Nguyen, Glenn Hickey, Daniel R. Zerbino, Brian Raney, Dent Earl, Joel Armstrong et al.
    Pages 207-221
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  19. CSAX: Characterizing Systematic Anomalies in eXpression Data
    Keith Noto, Carla Brodley, Saeed Majidi, Diana W. Bianchi, Donna K. Slonim
    Pages 222-236
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  20. WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads
    Murray Patterson, Tobias Marschall, Nadia Pisanti, Leo van Iersel, Leen Stougie, Gunnar W. Klau et al.
    Pages 237-249
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About these proceedings

Introduction

This book constitutes the refereed proceedings of the 18th Annual International Conference on Research in Computational Molecular Biology, RECOMB 2014, held in Pittsburgh, PA, USA, in April 2014. The 35 extended abstracts were carefully reviewed and selected from 154 submissions. They report on original research in all areas of computational molecular biology and bioinformatics.

Keywords

RNA bioinformatics clustering algorithms computational biology computational proteomics genetics machine learning molecular biology molecular evolution molecular sequence analysis ribonucleic acid systems biology

Editors and affiliations

  • Roded Sharan
    • 1
  1. 1.School of Computer ScienceTel Aviv UniversityTel AvivIsrael

Bibliographic information