Book Volume 16 2011

Modeling in Systems Biology

The Petri Net Approach

Editors:

ISBN: 978-1-84996-473-9 (Print) 978-1-84996-474-6 (Online)

Table of contents (14 chapters)

  1. Front Matter

    Pages I-XXIII

  2. Foundations

    1. Front Matter

      Pages 1-1

    2. No Access

      Chapter

      Pages 3-18

      Introduction

    3. No Access

      Chapter

      Pages 19-36

      Biochemical Fundamentals

    4. No Access

      Chapter

      Pages 37-56

      Petri Nets

  3. Modeling Techniques

    1. Front Matter

      Pages 57-57

    2. No Access

      Chapter

      Pages 59-72

      Discrete Modeling

    3. No Access

      Chapter

      Pages 73-100

      Modeling Genetic Regulatory Networks

    4. No Access

      Chapter

      Pages 101-120

      Hybrid Functional Petri Net with Extension for Dynamic Pathway Modeling

    5. No Access

      Chapter

      Pages 121-151

      Stochastic Modeling

    6. No Access

      Chapter

      Pages 153-178

      Quantitative Analysis

    7. No Access

      Chapter

      Pages 179-205

      Fuzzy Modeling

  4. Biochemical Applications

    1. Front Matter

      Pages 207-207

    2. No Access

      Chapter

      Pages 209-224

      Topological Analysis of Metabolic and Regulatory Networks

    3. No Access

      Chapter

      Pages 225-251

      Analysis of Dynamical Models of Signaling Networks with Petri Nets and Dynamic Graphs

    4. No Access

      Chapter

      Pages 253-279

      A Modular, Qualitative Modeling of Regulatory Networks Using Petri Nets

    5. No Access

      Chapter

      Pages 281-306

      A Case Study of HFPN Simulation: Finding Essential Roles of Ror Gene in the Interaction of Feedback Loops in Mammalian Circadian Clock

    6. No Access

      Chapter

      Pages 307-336

      Prediction of Network Structure

  5. Back Matter

    Pages 337-364