Plant Chromatin Dynamics

Methods and Protocols

  • Marian Bemer
  • Célia Baroux

Part of the Methods in Molecular Biology book series (MIMB, volume 1675)

Table of contents

  1. Front Matter
    Pages i-xiv
  2. Profiling of Chromatin States

    1. Front Matter
      Pages 1-1
    2. Clara Bourbousse, Moussa Benhamed, Fredy Barneche
      Pages 3-30
    3. Yun-Ru Chen, Sheng Yu, Silin Zhong
      Pages 31-43
    4. Susanne Edelmann, Stefan Scholten
      Pages 45-60
    5. Bénédicte Desvoyes, Zaida Vergara, Joana Sequeira-Mendes, Sofia Madeira, Crisanto Gutierrez
      Pages 71-82
    6. Bénédicte Desvoyes, Joana Sequeira-Mendes, Zaida Vergara, Sofia Madeira, Crisanto Gutierrez
      Pages 83-97
    7. Marie-Christine Carpentier, Ariadna Picart-Picolo, Frédéric Pontvianne
      Pages 99-109
    8. Ana Karina Morao, Erwann Caillieux, Vincent Colot, François Roudier
      Pages 111-130
    9. Alice Pajoro, Jose M. Muiño, Gerco C. Angenent, Kerstin Kaufmann
      Pages 167-181
    10. Marko Bajic, Kelsey A. Maher, Roger B. Deal
      Pages 183-201
  3. Chromatin Dynamics and Gene Regulation

    1. Front Matter
      Pages 203-203
    2. Blaise Weber, Suraj Jamge, Maike Stam
      Pages 247-270
    3. Alice Lunardon, Cristian Forestan, Silvia Farinati, Serena Varotto
      Pages 297-314
    4. Suraj Jamge, Gerco C. Angenent, Marian Bemer
      Pages 315-329
    5. Kathrin Lauss, Joost J. B. Keurentjes
      Pages 373-394
  4. Spatial Chromatin Organization

    1. Front Matter
      Pages 395-395
    2. Marcelina García-Aguilar, Daphné Autran
      Pages 419-441
    3. Wenjing She, Célia Baroux, Ueli Grossniklaus
      Pages 443-454
    4. Till David Bey, Maria Koini, Paul Fransz
      Pages 467-480
    5. Javier Arpòn, Valérie Gaudin, Philippe Andrey
      Pages 493-507
    6. Václaclav Bačovský, Roman Hobza, Boris Vyskot
      Pages 509-535
    7. Tohnyui Ndinyanka Fabrice, Lusik Cherkezyan, Christoph Ringli, Célia Baroux
      Pages 633-651
  5. Susanne Edelmann, Stefan Scholten
    Pages E1-E1
  6. Back Matter
    Pages 653-659

About this book


This volume provides a comprehensive collection of protocols that can be used to study plant chromatin structure and composition. Chapters divided into three sections detail the profiling of chromatin features in relation to epigenetic regulation, investigate the interaction between chromatin modifications and gene regulation, and explore the 3D spatial organization of the chromatin inside the nucleus. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.

Authoritative and cutting-edge, Plant Chromatin Dynamics: Methods and Protocols aims to ensure successful results in the further study of this vital field.


INTACT ChIP DNA replication MethylPipe epigenomics

Editors and affiliations

  • Marian Bemer
    • 1
  • Célia Baroux
    • 2
  1. 1.Department of Molecular BiologyWageningen University & ResearchWageningenThe Netherlands
  2. 2.Department of Plant and Microbial BiologyZürich-Basel Plant Science Center, University of ZürichZürichSwitzerland

Bibliographic information

  • DOI
  • Copyright Information Springer Science+Business Media LLC 2018
  • Publisher Name Humana Press, New York, NY
  • eBook Packages Springer Protocols
  • Print ISBN 978-1-4939-7317-0
  • Online ISBN 978-1-4939-7318-7
  • Series Print ISSN 1064-3745
  • Series Online ISSN 1940-6029
  • Buy this book on publisher's site