Yeast Functional Genomics

Methods and Protocols

  • Frédéric Devaux

Part of the Methods in Molecular Biology book series (MIMB, volume 1361)

Table of contents

  1. Front Matter
    Pages i-xi
  2. Can Wang, Markus S. Schröder, Stephen Hammel, Geraldine Butler
    Pages 1-40
  3. Hugo Devillers, Nicolas Morin, Cécile Neuvéglise
    Pages 41-56
  4. Wenjie Xu, Norma V. Solis, Scott G. Filler, Aaron P. Mitchell
    Pages 57-65
  5. Dawn A. Thompson
    Pages 67-76
  6. Agnès Baudin-Baillieu, Isabelle Hatin, Rachel Legendre, Olivier Namy
    Pages 105-124
  7. Antonio Jordán-Pla, Ana Miguel, Eva Serna, Vicent Pelechano, José E. Pérez-Ortín
    Pages 125-139
  8. Yue Wan, Kun Qu, Zhengqing Ouyang, Howard Y. Chang
    Pages 141-160
  9. Matthew B. Lohse, Pisiwat Kongsomboonvech, Maria Madrigal, Aaron D. Hernday, Clarissa J. Nobile
    Pages 161-184
  10. Axel Cournac, Martial Marbouty, Julien Mozziconacci, Romain Koszul
    Pages 227-245
  11. Christian Trahan, Lisbeth-Carolina Aguilar, Marlene Oeffinger
    Pages 265-287
  12. Thibaut Léger, Camille Garcia, Mathieu Videlier, Jean-Michel Camadro
    Pages 289-307
  13. Christian Klose, Kirill Tarasov
    Pages 309-324
  14. Celia Payen, Maitreya J. Dunham
    Pages 361-374
  15. Back Matter
    Pages 405-406

About this book


This volume provides a collection of protocols for the study of DNA-DNA contact maps, replication profiles, transcription rates, RNA secondary structures, protein-RNA interactions, ribosome profiling and quantitative proteomes and metabolomes. Written for the Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.


Authoritative and practical, Yeast Functional Genomics: Methods and Protocols aims to ensure successful results in the further study of this vital field.


DNA-DNA contact maps RNA secondary structures gene expression regulation generation sequencing technologies nuclear architecture protein-RNA interactions replication profiles ribosome profiling transcription rates translational rates

Editors and affiliations

  • Frédéric Devaux
    • 1
  1. 1.Laboratoire de biologie computationnelle et quantitativeSorbonne UniversitésParisFrance

Bibliographic information

  • DOI
  • Copyright Information Springer Science+Business Media New York 2016
  • Publisher Name Humana Press, New York, NY
  • eBook Packages Springer Protocols
  • Print ISBN 978-1-4939-3078-4
  • Online ISBN 978-1-4939-3079-1
  • Series Print ISSN 1064-3745
  • Series Online ISSN 1940-6029
  • Buy this book on publisher's site