Book 2010

Systems Biology for Signaling Networks

Editors:

ISBN: 978-1-4419-5796-2 (Print) 978-1-4419-5797-9 (Online)

Table of contents (35 chapters)

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  1. Front Matter

    Pages i-xvi

  2. Concepts

    1. Front Matter

      Pages 1-1

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      Chapter

      Pages 3-11

      Systems Biology Approaches: Solving New Puzzles in a Symphonic Manner

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      Chapter

      Pages 13-73

      Current Progress in Static and Dynamic Modeling of Biological Networks

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      Chapter

      Pages 75-83

      Getting Started in Biological Pathway Construction

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      Chapter

      Pages 85-107

      From Microarray to Biology

  3. Modeling and Reconstruction

    1. Front Matter

      Pages 109-109

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      Chapter

      Pages 111-137

      Computational Procedures for Model Identification

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      Chapter

      Pages 139-157

      Assembly of Logic-Based Diagrams of Biological Pathways

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      Chapter

      Pages 159-205

      Automating Mathematical Modeling of Biochemical Reaction Networks

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      Chapter

      Pages 207-234

      Strategies to Investigate Signal Transduction Pathways with Mathematical Modelling

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      Chapter

      Pages 235-252

      Inferring Transcriptional Regulatory Network

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      Chapter

      Pages 253-273

      Finding Functional Modules

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      Chapter

      Pages 275-294

      Modeling the Dynamics of Biological Networks from Time Course Data

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      Chapter

      Pages 295-336

      Decision Making in Cells

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      Chapter

      Pages 337-351

      Robustness of Neural Network Models

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      Chapter

      Pages 353-369

      Functional Modules in Protein–Protein Interaction Networks

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      Chapter

      Pages 371-397

      Mixture Model on Graphs: A Probabilistic Model for Network-Based Analysis of Proteomic Data

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      Chapter

      Pages 399-426

      Integration of Network Information for Protein Function Prediction

  4. Applications for Signaling Networks

    1. Front Matter

      Pages 427-427

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      Chapter

      Pages 429-446

      Cellular-Level Gene Regulatory Networks: Their Derivation and Properties

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      Chapter

      Pages 447-454

      Tyrosine-Phosphoproteome Dynamics

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      Chapter

      Pages 455-489

      Systems Biology of the MAPK1,2 Network

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      Chapter

      Pages 491-504

      Pathway Crosstalk Network

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