© 2020

Structural Bioinformatics

Methods and Protocols

  • Zoltán Gáspári

Part of the Methods in Molecular Biology book series (MIMB, volume 2112)

Table of contents

  1. Front Matter
    Pages i-xii
  2. David Sehnal, Radka Svobodová, Karel Berka, Lukáš Pravda, Adam Midlik, Jaroslav Koča
    Pages 1-13
  3. Barry J. Grant, Lars Skjærven, Xin-Qiu Yao
    Pages 15-28
  4. Natalie L. Dawson, Christine Orengo, Zoltán Gáspári
    Pages 43-57
  5. Fabrizio Pucci, Jean Marc Kwasigroch, Marianne Rooman
    Pages 59-73
  6. Douglas E. V. Pires, Stephanie Portelli, Pâmela M. Rezende, Wandré N. P. Veloso, Joicymara S. Xavier, Malancha Karmakar et al.
    Pages 91-106
  7. Csaba Hetényi, Mónika Bálint
    Pages 107-121
  8. Georgina Csizmadia, Bianka Farkas, Eszter Katona, Gábor E. Tusnády, Tamás Hegedűs
    Pages 123-130
  9. Brian Jiménez-García, Pau Bernadó, Juan Fernández-Recio
    Pages 131-144
  10. Mikael Trellet, Gydo van Zundert, Alexandre M. J. J. Bonvin
    Pages 145-162
  11. Dina Schneidman-Duhovny, Haim J. Wolfson
    Pages 163-174
  12. Thomas Madej, Aron Marchler-Bauer, Christopher Lanczycki, Dachuan Zhang, Stephen H. Bryant
    Pages 175-186 Open Access
  13. Pedro R. Romero, Naohiro Kobayashi, Jonathan R. Wedell, Kumaran Baskaran, Takeshi Iwata, Masashi Yokochi et al.
    Pages 187-218
  14. Sandro Bottaro, Tone Bengtsen, Kresten Lindorff-Larsen
    Pages 219-240
  15. Dániel Dudola, Bertalan Kovács, Zoltán Gáspári
    Pages 241-254
  16. Back Matter
    Pages 255-256

About this book


This volume looks at the latest techniques used to perform comparative structure analyses, and predict and evaluate protein-ligand interactions. The chapters in this book cover tools and servers such as LiteMol; Bio3D-Web; DALI; CATH; HoTMuSiC, a contact-base protein structure analysis tool known as CAD-Score; PyDockSaxs and HADDOCK; CombDock and DockStar; the BioMagResBank database; as well as BME and CoNSEnsX+. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, step-by-step, readily reproducible computational protocols, and tips on troubleshooting and avoiding known pitfalls.

Cutting-edge and comprehensive, Structural Bioinformatics: Methods and Protocols is a practical guide for researchers to learn more about the aforementioned tools to further enhance their studies in the growing field of structural bioinformatics.

Chapter 13 is open access under a CC-BY 4.0 license via


PDB database mmCIF PDBml NMR BioMagResBank

Editors and affiliations

  • Zoltán Gáspári
    • 1
  1. 1.Information Technology and BionicsPázmány Péter Catholic UniversityBudapestHungary

Bibliographic information

  • Book Title Structural Bioinformatics
  • Book Subtitle Methods and Protocols
  • Editors Zoltán Gáspári
  • Series Title Methods in Molecular Biology
  • Series Abbreviated Title Methods Molecular Biology
  • DOI
  • Copyright Information Springer Science+Business Media, LLC, part of Springer Nature 2020
  • Publisher Name Humana, New York, NY
  • eBook Packages Springer Protocols
  • Hardcover ISBN 978-1-0716-0269-0
  • Softcover ISBN 978-1-0716-0272-0
  • eBook ISBN 978-1-0716-0270-6
  • Series ISSN 1064-3745
  • Series E-ISSN 1940-6029
  • Edition Number 1
  • Number of Pages XII, 256
  • Number of Illustrations 10 b/w illustrations, 76 illustrations in colour
  • Topics Bioinformatics
  • Buy this book on publisher's site