Comparative Genomics

RECOMB 2006 International Workshop, RCG 2006 Montreal, Canada, September 24-26, 2006 Proceedings

  • Guillaume Bourque
  • Nadia El-Mabrouk
Conference proceedings RCG 2006
Part of the Lecture Notes in Computer Science book series (LNCS, volume 4205)

Table of contents

  1. Front Matter
    PDF
  2. Reconstructing Domain Compositions of Ancestral Multi-domain Proteins
    Behshad Behzadi, Martin Vingron
    Pages 1-10
  3. Domain Architecture in Homolog Identification
    N. Song, R. D. Sedgewick, D. Durand
    Pages 11-23
  4. Inferring Positional Homologs with Common Intervals of Sequences
    Guillaume Blin, Annie Chateau, Cedric Chauve, Yannick Gingras
    Pages 24-38
  5. On Genome Evolution with Accumulated Change and Innovation
    Damian Wójtowicz, Jerzy Tiuryn
    Pages 39-50
  6. Paths and Cycles in Breakpoint Graphs of Random Multichromosomal Genomes
    Wei Xu, Chunfang Zheng, David Sankoff
    Pages 51-62
  7. Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution
    Zaky Adam, Monique Turmel, Claude Lemieux, David Sankoff
    Pages 63-74
  8. How Pseudo-boolean Programming Can Help Genome Rearrangement Distance Computation
    Sébastien Angibaud, Guillaume Fertin, Irena Rusu, Stéphane Vialette
    Pages 75-86
  9. Sorting by Translocations Via Reversals Theory
    Michal Ozery-Flato, Ron Shamir
    Pages 87-98
  10. Inferring Gene Orders from Gene Maps Using the Breakpoint Distance
    Guillaume Blin, Eric Blais, Pierre Guillon, Mathieu Blanchette, Nadia El-Mabrouk
    Pages 99-112
  11. Ordering Partially Assembled Genomes Using Gene Arrangements
    Éric Gaul, Mathieu Blanchette
    Pages 113-128
  12. Evolution of Tandemly Repeated Sequences Through Duplication and Inversion
    Denis Bertrand, Mathieu Lajoie, Nadia El-Mabrouk, Olivier Gascuel
    Pages 129-140
  13. A PQ Framework for Reconstructions of Common Ancestors and Phylogeny
    Laxmi Parida
    Pages 141-155
  14. Intron Loss Dynamics in Mammals
    Jasmin Coulombe-Huntington, Jacek Majewski
    Pages 156-170
  15. Finding Maximum Likelihood Indel Scenarios
    Abdoulaye Baniré Diallo, Vladimir Makarenkov, Mathieu Blanchette
    Pages 171-185
  16. Conservation Patterns in cis-Elements Reveal Compensatory Mutations
    Perry Evans, Greg Donahue, Sridhar Hannenhalli
    Pages 186-199
  17. Transcription Factor Centric Discovery of Regulatory Elements in Mammalian Genomes Using Alignment-Independent Conservation Maps
    Nilanjana Banerjee, Andrea Califano
    Pages 200-214
  18. Identifiability Issues in Phylogeny-Based Detection of Horizontal Gene Transfer
    Cuong Than, Derek Ruths, Hideki Innan, Luay Nakhleh
    Pages 215-229
  19. Back Matter
    PDF

About these proceedings

Keywords

Alignment DNA sequences comparative genomics comparative maps complexity computational genomics coputational biology data analysis data mining genome genome algorithms genome comparison genome rearrangement multiple genome alignment programming

Editors and affiliations

  • Guillaume Bourque
    • 1
  • Nadia El-Mabrouk
    • 2
  1. 1.Genome Institute of SingaporeRepublic of Singapore
  2. 2.DIROUniversité de MontréalCanada

Bibliographic information

  • DOI https://doi.org/10.1007/11864127
  • Copyright Information Springer-Verlag Berlin Heidelberg 2006
  • Publisher Name Springer, Berlin, Heidelberg
  • eBook Packages Computer Science
  • Print ISBN 978-3-540-44529-6
  • Online ISBN 978-3-540-44530-2
  • Series Print ISSN 0302-9743
  • Series Online ISSN 1611-3349
  • About this book