Journal of the Korean Physical Society

, Volume 61, Issue 7, pp 1156–1162

Value of a probabilistic atlas in medical image segmentation regarding non-rigid registration of abdominal CT scans

Research Papers

DOI: 10.3938/jkps.61.1156

Cite this article as:
Park, H. & Meyer, C.R. Journal of the Korean Physical Society (2012) 61: 1156. doi:10.3938/jkps.61.1156


A probabilistic atlas provides important information to help segmentation and registration applications in medical image analysis. We construct a probabilistic atlas by picking a target geometry and mapping other training scans onto that target and then summing the results into one probabilistic atlas. By choosing an atlas space close to the desired target, we construct an atlas that represents the population well. Image registration used to map one image geometry onto another is a primary task in atlas building. One of the main parameters of registration is the choice of degrees of freedom (DOFs) of the geometric transform. Herein, we measure the effect of the registration’s DOFs on the segmentation performance of the resulting probabilistic atlas. Twenty-three normal abdominal CT scans were used, and four organs (liver, spinal cord, left and right kidneys) were segmented for each scan. A well-known manifold learning method, ISOMAP, was used to find the best target space to build an atlas. In summary, segmentation performance was high for high DOF registrations regardless of the chosen target space, while segmentation performance was lowered for low DOF registrations if a target space was far from the best target space. At the 0.05 level of statistical significance, there were no significant differences at high DOF registrations while there were significant differences at low DOF registrations when choosing different targets.


Probabilistic atlas Image analysis Degree of freedom ISOMAP Segmentation Target selection 

Copyright information

© The Korean Physical Society 2012

Authors and Affiliations

  1. 1.School of Electronic Electrical EngineeringSungkyunkwan UniversitySuwonKorea
  2. 2.Department of RadiologyUniversity of MichiganAnn ArborUSA

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