Abstract
The factors are analyzed, which influence both the hybridization thermodynamics and the DNA/DNA-duplex stability. The non-competitive hybridization of the DNA as well as the competitive hybridization on the surface are investigated. It is shown that the binding to the intercalating ligands results to an increase in the selectivity and sensitivity of the DNA chips.
Similar content being viewed by others
References
Ivnitski, D., Abdel-Hamid, I., Atanasov, P., and Wilkins, E., Biosensors and Bioelectronics, 1999, vol. 14, p. 599.
Labuda, J., Brett, A.M.O., Evtugyn, G., Fojta, M., Mascini, M., Ozsoz, M., Palchetti, I., Palecek, E., and Wang, J., Pure Appl. Chem., 2010, vol. 82, p. 1161.
Watterson, J.H., Piunno, P.A.E., and Krull, U.J., Anal. Chem. Acta, 2002, vol. 457, p. 29.
Halperin, A., Buhot, A., and Zhulina, E.B., J. Phys.: Condens. Matter., 2006, vol. 18, p. S463.
Ananyan, G., Avetisyan, A., Aloyan, L., and Dalyan, Y., Biophys. Chem., 2011, vol. 156, p. 96.
Ghazaryan, A.A., Dalyan, Y.B., Haroutiunian, S.G., Tikhomirova, A., and Chalikian, T.V., J. Amer. Chem. Soc., 2006, vol. 128, p. 1914.
Pasternack, R.F., Goldsmith, J.I., Szep, S., and Gibbs, E.J., Biophys. J., 1998, vol. 75, p. 1024.
Hinckley, D.M., Freeman, G.S., Whitmer, J.K., and de Pablo, J.J., J. Chem. Phys., 2013, vol. 139, p. 144903.
Hinckley, D.M., Lequieu, J.P., and de Pablo, J.J., J. Chem. Phys., 2014, vol. 141, p. 035102.
Peterson, A.W., Heaton, R.J., and Georgiadis, R.M., Nucl. Acids Res., 2001, vol. 29, p. 5163.
Halperin, A., Buhot, A., and Zhulina, E.B., Biophys. J., 2004, vol. 86, p. 718.
Hagan, M.F. and Chakraborty, A.K., J. Chem. Phys., 2004, vol. 120, p. 4958.
Seckar, M.M.A., Bloch, W., and John, P.M.S., Nuc. Acids Res., 2005, vol. 33, p. 366.
Sorokin, N.V., Chechetkin, V.R., Pan’kov, S.V., Somova, O.G., Livshits, M.A., Donnikov, M.Y., Turygin, A.Y., Barsky, V.E., and Zasedatelev, A.S., J. Biomol. Struct. Dyn., 2006, vol. 24, p. 57.
Irving, D., Gong, P., and Levicky, R., J. Phys. Chem. B, 2010, vol. 114, p. 7631.
Schmitt, T.J., Knotts IV, T.A., J. Chem. Phys., 134, 205105 (2011).
Nelson, S.M., Ferguson, L.R., and Denny, W.A., Mutat. Res., 2007, vol. 623, p. 24.
Kostjukov, V.V., Santiago, A.A.H., Rodriguez, F.R., Castilla, S.R., Parkinson, J.A., and Evstigneev, M.P., Phys. Chem. Chem. Phys., 2012, vol. 14, p. 5588.
Ricci, C.G. and Netz, P.A., J. Chem. Inf. Model., 2009, vol. 49, p. 1925.
Tanford, C., Proceed. Natl. Acad. Sci. USA, 1981, vol. 78, p. 270.
Pincus, P., Macromolecules, 1991, vol. 24, p. 2912.
Wittmer, J. and Joanny, J.F., Macromolecules, 1993, vol. 26, p. 2691.
Borisov, O.V., Zhulina, E.B., and Birshtein, T.M., Macromolecules, 1994, vol. 27, p. 4795.
Wong, I.Y. and Melosh, N.A., Biophys. J., 2010, vol. 98, p. 2954.
Author information
Authors and Affiliations
Corresponding author
Additional information
Original Russian Text © H.L. Tsaturyan, Sh.A. Tonoyan, V.F. Morozov, Y.Sh. Mamasakhlisov, 2017, published in Izvestiya Natsional’noi Akademii Nauk Armenii, Fizika, 2017, Vol. 52, No. 2, pp. 244–255.
About this article
Cite this article
Tsaturyan, H.L., Tonoyan, S.A., Morozov, V.F. et al. Effect of ligands binding on the isotherm of hybridization of the DNA-chip. J. Contemp. Phys. 52, 180–188 (2017). https://doi.org/10.3103/S106833721702013X
Received:
Published:
Issue Date:
DOI: https://doi.org/10.3103/S106833721702013X