Skip to main content
Log in

Publishing scientific data as linked open data

  • Published:
Scientific and Technical Information Processing Aims and scope

Abstract

The concept and computer methods for the implementation of new form-linked data technologies for scientific communication are observed. This concept is being advanced by the Internet creator Tim Berners-Lee in the framework of the general idea of the Semantic WEB with the introduction in internet pages of descriptions that are understood by computers. An overview of the technologies and tools that enable online publishing of open data so that they are automatic linked with thematically related resources is given. Many advantages of the new form of publications in the field of science, viz., the integration of heterogeneous data, access from publications to the original arrays of raw data, and to software, as well as standardization of terms and concepts of the application domain through anappeal to ontologies and vocabularies posted on the web are shown.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Berners-Lee, T., Hendler, J., and Lassila, O., The semantic web, Sci. Am., 2001, vol. 284, pp. 35–43.

    Article  Google Scholar 

  2. Kogalovskii, M.R., Entsiklopediya tekhnologii baz dannykh (Encyclopedia of Data Base Technology), Moscow: Finansy Statistika, 2002.

    Google Scholar 

  3. Erkimbaev, A.O., Zitserman, V.Yu., Kobzev, G.A., Son, E.E., and Sotnikov, A.N., Integration of databases on substance properties: Approaches and technologies, Autom. Docum. Mathem. Ling., 2012, vol. 46, pp. 170–176.

    Article  Google Scholar 

  4. Berners-Lee, T., Design Issues: Linked Data. Online at www.w3.org/DesignIssues/LinkedData.html.

  5. Open Data - An Introduction “Today we find ourselves in the midst of an open data revolution”. http://okfn.org/opendata

  6. Bauer, F. and Kaltenböck, M., Linked Open Data: The Essentials. A Quick Start Guide for Decision Makers, Vienna, 2012. www.semantic-web.at/LOD-TheEssentials.pdf

    Google Scholar 

  7. 5 Linked Open Data: The Essentials. A Quick Start Guide for Decision Makers, Vienna, 2012. http://5-stardata.info/

  8. Reegle LOD Developer Guide. http://data.reegle.info/developers/guide

  9. Introducing Linked Data and The Semantic Web. http://www.linkeddatatools.com/semantic-web-basics

  10. Radchenko, I.A., Introduction into Concept of Linked Open Data. Linked Open Data Webinar Cycle. AIMS, 2013. http://www.slideshare.net/iradche/linked-open-data-16524818

    Google Scholar 

  11. RDF Vocabulary Description Language 1.0: RDF Schema. W3C Recommendation, 2004. http://www.w3.org/TR/rdf-schema

  12. Bizer, C., Cyganiak, R., and Heath, T., How to Publish Linked Data on the Web. http://sites.wiwiss.fuberlin.de/suhl/bizer/pub/LinkedDataTutorial

  13. Linked Data Cookbook. From Government Linked Data (GLD) Working Group Wiki. http://www.w3.org/2011/gld/wiki/Linked_Data_Cookbook

  14. Murray-Rust, P. and Rzepa, H.S., Scientific publications in XML - towards a global knowledge base, Data Sci. J., 2002, no 1, pp. 84–98.

    Article  Google Scholar 

  15. Health Care and Life Science (HCLS) Linked Data Guide. www.w3.org/2001/sw/hcls/notes/hcls-rdf-guide/

  16. Marshall, M.S., Boyce, R., Deus, H.F., Zhao, J., Willighagen, E.L., Samwald, M., Pichler, E., Hajagos, J., Prud’hommeaux, E., and Stephens, S., Emerging practices for mapping and linking life sciences data using RDF - A case series, Web semantics: Science, Services and Agents on the World Wide Web, 2012, vol. 14, pp. 2–13.

    Article  Google Scholar 

  17. Berners-Lee, T., Relational Databases on the Semantic Web, Design Issue Note, 1998–2009. www.w3.org/DesignIssues/RDB-RDF.html

  18. Adams, N., Semantic Chemistry, The Voice of Semantic Web Technology and Linked Data Businessm. semanticweb.com, 2009.

  19. Willighagen, E.L. and Brändle, M.P., Resource description framework technologies in chemistry, J. Cheminformatics, 2011, vol. 3, no. 15. www.jchem-inf.com/content/3/1/15

    Article  Google Scholar 

  20. Murray-Rust, P., Rzepa, H.S., Williamson, M., and Willighagen, E., Chemical Markup, XML, and the World Wide Web. 5. Applications of chemical metadata in RSS aggregators, J. Chem. Inf. Comput. Sci., 2004, vol. 44, 462–469.

    Article  Google Scholar 

  21. Konyk, M., de Leon, A., and Dumontier, M., Chemical knowledge for the semantic Web, Lect. Notes in Comp. Sci., 2008, vol. 5109, pp. 169–176.

    Article  Google Scholar 

  22. Chepelev, L.L. and Dumontier, M., Chemical entity semantic specification: Knowledge representation for efficient semantic cheminformatics and facile data integration, J. Cheminformatics, 2011, vol. 3, no. 20.

    Article  Google Scholar 

  23. Frey, J.G. and Bird, C.L., Cheminformatics and the semantic Web: Adding value with linked data and enhanced provenance, WIREs Comput. Mol. Sci., 2013, vol. 3, pp. 465–481. http://onlinelibrary.wiley.com/doi/10.1002/wcms.1127/pdf

    Article  Google Scholar 

  24. Murray-Rust, P. and Rzepa, H.S., XML for scientific publishing, OCLC Syst. Serv., 2003, vol. 19, pp. 163–169.

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to A. O. Erkimbaev.

Additional information

Original Russian Text © A.O. Erkimbaev, V.Yu. Zitserman, G.A. Kobzev, V.A. Serebrjakov, K.B. Teymurazov, 2013, published in Nauchno-Technicheskaya Informatsiya, Seriya 1, 2013, No. 12, pp. 1–11.

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Erkimbaev, A.O., Zitserman, V.Y., Kobzev, G.A. et al. Publishing scientific data as linked open data. Sci. Tech.Inf. Proc. 40, 253–263 (2013). https://doi.org/10.3103/S014768821304014X

Download citation

  • Received:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.3103/S014768821304014X

Keywords

Navigation