, Volume 74, Issue 8, pp 1031–1043 | Cite as

Seasonal variations in culturable archaea and their plant growth promoting attributes to predict their role in establishment of vegetation in Rann of Kutch

  • Ajar Nath Yadav
  • Sneha Gulati
  • Divya Sharma
  • Ram Nageena Singh
  • Mahendra Vikram Singh Rajawat
  • Rajesh Kumar
  • Rinku Dey
  • Kamal Krishna Pal
  • Rajeev Kaushik
  • Anil Kumar SaxenaEmail author
Original Article


Archaea are unique microorganisms that are present in ecological niches of high temperature, pH and high salinity. Archaea may be present freely or associated with plant rhizosphere. The plant-microbe interactions may be implicit to plants adaptation to abiotic stress of hypersalinity. With an aim to look for population dynamics of archaea at different seasons of the year in hypersaline environments of Rann of Kutch, the rhizospheric, non-rhizospheric, water and sediment samples were collected during autumn, winter and summer. Sampling sites were selected on the basis of topography and vegetation which included barren land, salt pan and rhizosphere of monocot and dicot plants. Soil pH and salinity (mS cm−1) varied from 7.4–10.15 and 1.19–106.7 respectively. A total of 157 halophilic archaea were isolated using seven different selective media. The isolated archaeal were screened for abiotic stress and it has been found they show the wide range of in the tolerance to temperatures (25–65 °C), NaCl concentrations (0.86–5.48 M), water stresses (upto −0.75Mpa) and pH (4–10). The profiling of archaeal community using 16S rRNA gene sequencing and phylogenetic analysis revealed that all archaeal isolates belonged to a family halobacteriaceae of phylum euryarchaeota. Based on 16S rRNA gene sequencing the cultures were identified and belonged to twenty eight distinct species of 16 genera namely Haladaptatus, Haloarcula, Halobacterium, Halococcus, Haloferax, Halogeometricum, Halolamina, Halopenitus, Halorubrum, Halosarcina, Halostagnicola, Haloterrigena, Natrialba, Natrinema, Natronoarchaeum and Natronomonas. In the present study, seasonal and niche-specific archaea were reported and characterized from hypersaline environments. The haloarchaea with multifunctional plant growth promoting attributes, prevalent in the hypersaline environments must be colonizing the rhizosphere of plants and contributing to the growth and sustenance of plants.


Archaeal biodiversity Haloarchaea Hypersaline Population dynamics Rann of Kutch 



The authors are grateful to the Division of Microbiology, ICAR-Indian Agricultural Research Institute, New Delhi and National Fund for Basic, Strategic and Frontier Application Research in Agriculture (NFBSFARA) project “Role of Archaebacteria in Alleviation of Salinity and Moisture Stress in Plants” Indian Council of Agricultural Research for providing the facilities and financial support, to undertake the investigations.

Compliance with ethical standards

Conflict of interest

The authors declare no conflict of interest.

Supplementary material

11756_2019_259_MOESM1_ESM.doc (154 kb)
ESM 1 (DOC 154 kb)


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Copyright information

© Institute of Molecular Biology, Slovak Academy of Sciences 2019

Authors and Affiliations

  • Ajar Nath Yadav
    • 1
    • 2
  • Sneha Gulati
    • 2
  • Divya Sharma
    • 2
  • Ram Nageena Singh
    • 2
  • Mahendra Vikram Singh Rajawat
    • 2
  • Rajesh Kumar
    • 2
  • Rinku Dey
    • 3
  • Kamal Krishna Pal
    • 3
  • Rajeev Kaushik
    • 2
  • Anil Kumar Saxena
    • 4
    Email author
  1. 1.Department of Biotechnology, Akal College of AgricultureEternal UniversityBaru SahibIndia
  2. 2.Division of MicrobiologyICAR-Indian Agricultural Research InstituteNew DelhiIndia
  3. 3.ICAR-Directorate of Groundnut ResearchJunagadhIndia
  4. 4.ICAR-National Bureau of Agriculturally Important MicroorganismsMauIndia

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