Abstract
Ferrocene (Fc) and β-cyclodextrin (βCyD) were modified at each end of stem-loop structured DNA as an electrochemical signal generator and its quencher, respectively, to give an electrochemical molecular beacon (eMB). A relatively high efficiency of signal quenching was achieved by an inclusion complex (βCyD ⊃ Fc) formation that was induced on the stem structure of the closed form (= stem-loop structure) of eMB. With the addition of target DNA, the structure of eMB opened to form a linear duplex, where the Fc dissociated from the βCyD to restore its intrinsic electrochemical signal. The signal contrast of the electric current for this off/on-type sensor was high, ca. 95. This technique did not require any modification of the electrode surface, and it realized the detection of the target nucleic acids in a homogeneous solution with a high sensitivity using high-performance liquid chromatography (HPLC) equipped with electrochemical detector.
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M. Chiba, Y. Ichikawa, M. Kamiya, T. Komatsu, T. Ueno, K. Hanaoka, T. Nagano, N. Lange, and Y. Urano, Angew. Chem. Int. Ed., 2017, 56, 10418. (b) S. Mao, Y. Ying, X. Wu, C. J. Krueger, and A. K. Chen, Nucl. Acids Res., 2019, 47, e131. (c) J. C. Alexander, S. Browne, A. Pandit, and Y. Rochev., PLOS ONE, 2013, 8, e65749. (d) L. Qiu, C. Wu, M. You, D. Han, T. Chen, G. Zhu, J. Jiang, R. Yu, and W. Tan, J. Am. Chem. Soc., 2013, 135, 12952.
G. Bonet, S. Tyagi, A. Libchaber, and F. R. Kramer, Proc. Natl. Acad. Sci. U. S. A., 1999, 96, 6171. (b) S. Tyagi and F. R. Kramer, Nat. Biotechnol., 1996, 14, 303.
Y. Kitamura, S. Yamamoto, Y. Osawa, H. Matsuura, and T. Ihara, Chem. Commun., 2013, 49, 285. (b) X. Zuo, S. Song, J. Zhang, D. Pan, L. Wang, and C. Fan, J. Am. Chem. Soc., 2007, 129, 1042. (c) R. Yamamoto and P. K. R. Kumar, Genes Cells, 2000, 5, 389. (d) W. Wang, C. Chen, M. Qian, and X. Zhao, Sens. Actuators, B, 2008, 129, 211. (e) N. Hamaguchi, A. Ellington, and M. Stanton, Anal. Biochem., 2001, 294, 126.
S. Takenaka, Y. Uto, H. Kondo, T. Ihara, and M. Takagi, Anal. Biochem., 1994, 218, 436. (b) T. Ihara, Y. Maruo, S. Takenaka, and M. Takagi, Nucl. Acids Res., 1996, 24, 4273. (c) T. Ihara, M. Nakayama, M. Murata, K. Nakano, and M. Maeda, Chem. Commun., 1997, 1609. (d) S. Wang, L. Zhang, S. Wan, S. Cansiz, C. Cui, Y. Liu, R. Cai, C. Hong, I.-T. Teng, M. Shi, Y. Wu, Y. Dong, and W. Tan, ACS Nano, 2017, 11, 4943. (e) Z. Ge, M. Lin, P. Wang, H. Pei, J. Yan, J. Shi, Q. Huang, D. He, C. Fan, and X. Zuo, Anal. Chem., 2014, 86, 2124. (f) S. Sato and S. Takenaka, Anal. Chem., 2012, 84, 1772. (g) A. Anne and C. Demaille, J. Am. Chem. Soc., 2006, 128, 542. (h) A. Trifonov, E. Sharon, R. Tel-Vered, J. S. Kahn, and I. Willner, J. Phys. Chem. C, 2016, 120, 15743. (i) T. G. Drummond, M. G. Hill, and J. K. Barton, Nat. Biotechnol., 2003, 21, 1192. (j) E. Farjami, L. Clima, K. Gothelf, and E. E. Ferapontova, Anal. Chem., 2011, 83, 1594.
T. Ihara, T. Wasano, R. Nakatake, P. Arslan, A. Futamura, and A. Jyo, Chem. Commun., 2011, 47, 12388.
S. Agrawal, “Protocols for Oligonucleotide Conjugates, Synthesis and Analytical Techniques, Methods in Molecular Biology”, 1993, Vol. 26, Humana Press, Tomowa, NJ, 233.
G. T. Hermanson, “Bioconjugate Techniques”, 1996, Academic Press, San Diego.
L. A. Marky and K. J. Breslauer, Biopolymers, 1987, 26, 1601.
D. R. van Staveren and N. Metzler-Nolte, Chem. Rev., 2004, 104, 5931. (b) T. Matsue, D. H. Evans, T. Osa, and N. Kobayashi, J. Am. Chem. Soc., 1985, 107, 3411. (c) S. Watanabe, S. Sato, K. Ohtsuka, and S. Takenaka, Anal. Chem., 2011, 83, 7290.
J.-S. Wu, K. Toda, A. Tanaka, and I. Sanemasa, Bull. Chem. Soc. Jpn., 1998, 71, 1615.
H. Aoki, A. Kitajima, and H. Tao, Spramol. Chem., 2010, 7, 455.
A. Tsourkas, M. A. Behlke, S. D. Rose, and G. Bao, Nucl. Acids Res., 2003, 31, 1319.
Acknowledgments
This research was partly supported by a grant-in-aid for Scientific Research (B) (No. 15H03829 to T. I.) from the Ministry of Education, Culture, Sports, Science, and Technology, Japan. We thank Edanz Group (www.edanzediting.com/ac) for editing a draft of this manuscript.
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Kitamura, Y., Mishio, K., Arslan, P. et al. Electrochemical Molecular Beacon for Nucleic Acid Sensing in a Homogeneous Solution. ANAL. SCI. 36, 959–964 (2020). https://doi.org/10.2116/analsci.19P456
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DOI: https://doi.org/10.2116/analsci.19P456