Skip to main content
Log in

Isolation and characterization of a novel strain of Natrinema containing a bop gene

  • Articles
  • Published:
Journal of Zhejiang University-SCIENCE B Aims and scope Submit manuscript

Abstract

A novel member of extremely halophilic archaea, strain AJ2, was isolated from Ayakekum Lake located in Altun Mountain National Nature Reserve of Xinjiang Uygur Autonomous Region in China. The strain AJ2 requires at least 10% (w/v) NaCl and grows 10% to 30% (optimum at 20%). Phylogenetic analysis based on 16S rDNA sequence comparison revealed that strain AJ2 clustered to three Natrinema species with less than 97.7% sequence similarities, suggesting AJ2 is a novel member of Natrinema. A bacteriorhodopsin-encoding (bop) gene was subsequently detected in the AJ2 genome using the polymerase chain reaction technique. The cloning and sequencing of a 401 base pairs fragment indicated the deduced amino acid sequence of bop from AJ2 is different from that reported for bacteriorhodopsins. This is the first reported detection of a bop gene in Natrinema.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Dunn, R., McCoy, J., Simsek, M., Majumdar, A., Chang, S.H., RajBhandary, U.L., Khorana, H.G., 1981. The bacteriorhodopsin gene.Proc Natl Acad Sci USA,78:6744–6748.

    Article  CAS  Google Scholar 

  • Felsenstein, J., 2003. PHYLIP. http://evolution.genetics.washington.edu/phylip.html.

  • Frydrych, M., Silfsten, P., Parkkinen, S., Parkkinen, J., Jaaskelainen, T., 2000. Color sensitive retina based on bacteriorhodopsin.Biosystems,54:131–140.

    Article  CAS  Google Scholar 

  • Gupta, R., Lanter, J.M., Woese, C.R., 1983. Sequence of the 16S ribosomal RNA fromHalobacterium volcanii, an archaebacterium.Science,221:656–659.

    Article  CAS  Google Scholar 

  • Ihara, K., Umemura, T., Katagiri, I., Kitajima-Ihara, T., Sugiyama, Y., Kimura, Y., Mukohata, Y., 1999. Evolution of the archaeal rhodopsins: evolution rate changes by gene duplication and functional differentiation.J Mol Biol,285:163–174.

    Article  CAS  Google Scholar 

  • Kyte, J., Doolittle, R.F., 1982. A simple method for displaying the hydropathic character of a protein.J Mol Biol,157:105–132.

    Article  CAS  Google Scholar 

  • Lanyi, J.K., Pohorille, A., 2001. Proton pumps: mechanism of action and applications.TRENDS Biotechnol,19: 140–144.

    Article  CAS  Google Scholar 

  • Luecke, H., Schobert, B., Richter, H.T., Cartailler, J.P., Lanyi, J.K., 1999. Structural changes in bacteriorhodopsin during ion transport at 2 angstrom resolution.Science,286:255–261.

    Article  CAS  Google Scholar 

  • Margesin, R., Schinner, F., 2001. Potential of halotolerant and halophilic microorganisms for biotechnology.Extremophiles,5:73–83.

    Article  CAS  Google Scholar 

  • McGenity, T.J., Gemmell, R.T., Grant, W.D., 1998. Proposal of a new halobacterial genusNatrinema gen. nov., with two speciesNatrinema pellirubrum nom.nov. andNatrinema pallidum nom. nov.Int J Syst Bacteriol,48:1187–1196.

    Article  Google Scholar 

  • Mukohata, Y., Ihara, K., Tamura, T., Sugiyama, Y., 1999. Halobacterial rhodopsins.J Biochem,125:649–657.

    Article  CAS  Google Scholar 

  • Oesterhelt, D., Stoeckenius, W., 1971. Rhodopsin-like protein from the purple membrane ofHalobacterium halobium.Nature,233:149–152.

    CAS  Google Scholar 

  • Oesterhelt, D., Stoeckenius, W., 1974. Isolation of the cell membrane ofHalobacterium halobium and its fractionation into red and purple membrane.Methods Enzymol,31:667–678.

    Article  CAS  Google Scholar 

  • Otomo, J., Urabe, Y., Tomioka, H., Sasabe, H., 1992. The primary structures of helices A to G of three new bacteriorhodopsin-like retinal proteins.J Gen Microbiol,138:2389–2396.

    Article  CAS  Google Scholar 

  • Radax, C., Cruber, C., Stan-Lotter, H., 2001. Novel haloarchaeal 16S rRNA gene sequences from Alpine Permo-Triassic rock salt.Extremophiles,5:221–228.

    Article  CAS  Google Scholar 

  • Stackebrandt, E., Goebel, B.M., 1994. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology.Int J Syst Bacteriol,44:846–849.

    Article  CAS  Google Scholar 

  • Wang, H., Zhan, S., Sun, Q., Xu, D., Zhao, W., Huang, W., Li, Q., 2000. Primary structure of helix C to helix G of a new retinal protein in H.sp.xz515.Chinese Sci Bull,45:1108–1112 (in Chinese).

    Article  CAS  Google Scholar 

  • Wise, K.J., Gillespie, N.B., Stuart, J.A., Krebs, M.P., Birge, R., 2002. Optimization of bacteriorhodopsin for bioelectronic devices.TRENDS Biotechnol,20:387–394.

    Article  CAS  Google Scholar 

  • Xin, H., Itoh, T., Zhou, P., Suzuki, K.I., Kamekura, M., Nakase, T., 2000.Natrinema versiforme sp. nov., an extremely halophilic archaeon from Aibi salt lake, Xinjiang, China.Int J Syst Evol Microbiol,50:1297–1303.

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Min Wu.

Additional information

Porject (No. 30370029) supported by the National Natural Science Foundation of China

Rights and permissions

Reprints and permissions

About this article

Cite this article

Xu, Xw., Wu, M. & Huang, Wd. Isolation and characterization of a novel strain of Natrinema containing a bop gene. J Zheijang Univ Sci B 6, 142–146 (2005). https://doi.org/10.1631/jzus.2005.B0142

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1631/jzus.2005.B0142

Key words

CLC number

Navigation