Abstract
The atomic force microscope (AFM) allows biomolecules to be observed and manipulated under native conditions. It produces images with an outstanding signal-to-noise ratio and addresses single molecules while the sample is in a buffer solution. Progress in sample preparation and instrumentation has led to topographs that reveal subnanometer details and the surface dynamics of biomolecules.Tethering single molecules between a support and a retracting AFM tip produces force–extension curves, giving information about the mechanical stability of secondary structural elements. For both imaging and force spectroscopy, the cantilever and its tip are critical: the mechanical properties of the cantilever dictate the force sensitivity and the scanning speed, whereas the tip shape determines the achievable lateral resolution.
Similar content being viewed by others
References
G. Binnig, C.F. Quate, and C. Gerber, Phys. Rev. Lett. 56 (1986) p. 930.
J. Mou, J. Yang, and Z. Shao, J. Mol. Biol. 248 (1995) p. 507.
D.J. Müller, M. Amrein, and A. Engel, J. Struct. Biol. 119 (1997) p. 172.
D.M. Czajkowsky, S. Sheng, and Z. Shao, J. Mol. Biol. 276 (1998) p. 325.
S. Scheuring, F. Reiss-Husson, A. Engel, J.L. Rigaud, and J.L. Ranck, EMBO J. 20 (2001) p. 3029.
D.J. Müller, D. Fotiadis, S. Scheuring, S.A. Müller, and A. Engel, Biophys. J. 76 (1999) p. 1101.
C. Möller, M. Allen, V. Elings, A. Engel, and D.J. Müller, Biophys. J. 77 (1999) p. 1150.
P.K. Hansma, J.P. Cleveland, M. Radmacher, D.A. Walters, P.E. Hillner, M. Bezanilla, M. Fritz, D. Vie, H.G. Hansma, C.B. Prater, J. Massie, L. Fukunaga, J. Gurley, and V. Elings, Appl. Phys. Lett. 64 (1994) p. 1738.
W. Han, S.M. Lindsay, M. Dlakic, and R.E. Harrington, Nature 386 (1997) p. 563.
M.B. Viani, T.E. Schäffer, G.T. Paloczi, L.I. Pietrasanta, B.L. Smith, J.B. Thompson, M. Richter, M. Rief, H.E. Gaub, K.W. Plaxco, A.N. Cleland, H.G. Hansma, and P.K. Hansma, Rev. Sci. Instrum. 70 (1999) p. 4300.
A. Grant and L. McDonnell, Ultramicroscopy 97 (2003) p. 177.
A.E. Blaurock and W. Stoeckenius, Nature New Biol. 233 (1971) p. 152.
D. Fotiadis and A. Engel, Methods Mol. Biol. 242 (2004) p. 291.
D.J. Müller, J.B. Heymann, F. Oesterhelt, C. Möller, H. Gaub, G. Büldt, and A. Engel, Biochim. Biophys. Acta 1460 (2000) p. 27.
D.J. Müller, G. Büldt, and A. Engel, J. Mol. Biol. 249 (1995) p. 239.
S. Scheuring, D.J. Müller, H. Stahlberg, H.A. Engel, and A. Engel, Eur. Biophys. J. 31 (2002) p. 172.
D. Fotiadis, Y. Liang, S. Filipek, D.A. Saperstein, A. Engel, and K. Palczewski, Nature 421 (2003) p. 127.
S. Scheuring, J. Seguin, S. Marco, D. Levy, B. Robert, and J.L. Rigaud, Proc. Natl. Acad. Sci. U.S.A. 100 (2003) p. 1690.
D. Fotiadis, S. Scheuring, S.A. Müller, A. Engel, and D.J. Müller, Micron 33 (2002) p. 385.
F.A. Schabert, C. Henn, and A. Engel, Science 268 (1995) p. 92.
D. Fotiadis, L. Hasler, D.J. Müller, H. Stahlberg, J. Kistler, and A. Engel, J. Mol. Biol. 300 (2000) p. 779.
D.J. Müller, G.M. Hand, A. Engel, and G.E. Sosinsky, EMBO J. 21 (2002) p. 3598.
D. Fotiadis, D.J. Müller, G. Tsiotis, L. Hasler, P. Tittman, T. Mini, P. Jenö, H. Gross, and A. Engel, J. Mol. Biol. 283 (1998) p. 83.
C.A. Siebert, P. Qian, D. Fotiadis, A. Engel, C.N. Hunter, and P.A. Bullough, EMBO J. 23 (2004) p. 690.
D. Fotiadis, P. Qian, A. Philippsen, P.A. Bullough, A. Engel, and C.N. Hunter, J. Biol. Chem. 279 (2004) p. 2063.
A.F. Oberhauser, P.K. Hansma, M. Carrion-Vazquez, and J.M. Fernandez, Proc. Natl. Acad. Sci. U.S.A. 98 (2001) p. 468.
H. Li, W.A. Linke, A.F. Oberhauser, M. Carrion-Vazquez, J.G. Kerkvliet, H. Lu, P.E. Marszalek, and J.M. Fernandez, Nature 418 (2002) p. 998.
A.F. Oberhauser, C. Badilla-Fernandez, M. Carrion-Vazquez, and J. M. Fernandez, J. Mol. Biol. 319 (2002) p. 433.
T.E. Fisher, M. Carrion-Vazquez, A.F. Oberhauser, H. Li, P.E. Marszalek, and J.M. Fernandez, Neuron 27 (2000) p. 435.
M. Carrion-Vazquez, A.F. Oberhauser, T.E. Fisher, P.E. Marszalek, H. Li, and J.M. Fernandez, Prog. Biophys. Mol. Biol. 74 (2000) p. 63.
M. Rief, M. Gautel, and H.E. Gaub, Adv. Exp. Med. Biol. 481 (2000) p. 129.
A. Minajeva, M. Kulke, J.M. Fernandez, and W.A. Linke, Biophys. J. 80 (2001) p. 1442.
P.M. Williams, S.B. Fowler, R.B. Best, J.L. Toca-Herrera, K.A. Scott, A. Steward, and J. Clarke, Nature 422 (2003) p. 446.
P.E. Marszalek, H. Lu, H. Li, M. Carrion- Vazquez, A.F. Oberhauser, K. Schulten, and J.M. Fernandez, Nature 402 (1999) p. 100.
F. Oesterhelt, D. Oesterhelt, M. Pfeiffer, A. Engel, H.E. Gaub, and D.J. Müller, Science 288 (2000) p. 143.
D.J. Müller, M. Kessler, F. Oesterhelt, C. Möller, D. Oesterhelt, and H. Gaub, Biophys. J. 83 (2002) p. 3578.
C. Möller, D. Fotiadis, K. Suda, A. Engel, M. Kessler, and D.J. Müller, J. Struct. Biol. 142 (2003) p. 369.
H. Janovjak, M. Kessler, D. Oesterhelt, H. Gaub, and D.J. Müller, EMBO J. 22 (2003) p. 5220.
T. Ando, N. Kodera, E. Takai, D. Maruyama, K. Saito, and A. Toda, Proc. Natl. Acad. Sci. U.S.A. 98 (2001) p. 12468.
D.A. Walters, J.P. Cleveland, N.H. Thomson, P.K. Hansma, M.A. Wendman, G. Gurley, and V. Elings, Rev. Sci. Instrum. 67 (1996) p. 3583.
M.B. Viani, T.E. Schäfer, A. Chand, M. Rief, H. Gaub, and P.K. Hansma, J. Appl. Phys. 86 (1999) p. 2258.
J.L. Yang, M. Despont, B.W. Hoogenboom, U. Dreschler, P.L.T.M. Frederix, S. Martin, H.J. Hug, P. Vettiger, and A. Engel, in Proc. 17th IEEE Intl. Conf. on Micro Electro Mechanical Systems (MEMS 2004) (Institute of Electrical and Electronics Engineers, Piscataway, NJ, 2004) p. 560.
M.B. Viani, L.I. Pietrasanta, J.B. Thompson, A. Chand, I.C. Gebeshuber, J.H. Kindt, M. Richter, H.G. Hansma, and P.K. Hansma, Nat. Struct. Biol. 7 (2000) p. 644.
B.W. Hoogenboom, P.L.T.M. Frederix, S. Martin, A. Engel, and H.J. Hug (2004) in preparation.
P.L.T.M. Frederix, T. Akiyama, U. Staufer, C. Gerber, D. Fotiadis, D.J. Müller, and A. Engel, Curr. Opin. Chem. Biol. 7 (2003) p. 641.
T. Akiyama, M.R. Gullo, N.F. de Rooij, U. Staufer, A. Tonin, A. Engel, and P.L.T.M. Frederix, in Proc. 12th Intl. Conf. on Scanning Tunneling Microscopy/Spectroscopy and Related Techniques, Vol. 696, edited by P.M. Koenraad and M. Kemerink (American Institute of Physics, Eindhoven, 2003) p. 166.
G. Schurmann, W. Noell, U. Staufer, and N.F. de Rooij, Ultramicroscopy 82 (2000) p. 33.
M. Stopka, D. Drews, K. Mayr, M. Lacher, W. Ehrfeld, T. Kalkbrenner, M. Graf, V. Sandoghdar, and J. Mlynek, Microelectron. Eng. 53 (2000) p. 183.
A. Meister, S. Jeney, M. Liley, T. Akiyama, U. Staufer, N.F. de Rooij, and H. Heinzelmann, Microelectron. Eng. 67-68 (2003) p. 2003.
P.K. Hansma, B. Drake, O. Marti, S.A.C. Gould, and C.B. Prater, Science 243 (1989) p. 641.
Rights and permissions
About this article
Cite this article
Frederix, P.L.T.M., Hoogenboom, B.W., Fotiadis, D. et al. Atomic Force Microscopy of Biological Samples. MRS Bulletin 29, 449–455 (2004). https://doi.org/10.1557/mrs2004.138
Published:
Issue Date:
DOI: https://doi.org/10.1557/mrs2004.138