Skip to main content
Log in

Predicted structures of two proteins involved in human diseases

  • Original Article
  • Published:
Cell Biochemistry and Biophysics Aims and scope Submit manuscript

Abstract

Structures of 79 proteins involved in human diseases were predicted by sequence alignments with structural templates. The predicted structures for ALDP and CSA, proteins responsible for adrenoleukodystrophy and the Cockayne syndrome, respectively, were analyzed to elucidate the molecular basis of disease mutations. In particular we positioned residue P484 of ALDP in the homodimer interface. This positioning is consistent with a recent experimental finding that the mutation P484R significantly decreases the self-interaction of ALDP and suggests that the disease mechanism of this mutation lies in the impaired ALDP dimerization. We identified two new WD repeats in CSA and suggest that one of these forms part of the interaction surface with other proteins.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. International Human Genome Sequencing Consortium (2001) Initial sequencing and analysis of the human genome. Nature 409, 860–921.

    Article  Google Scholar 

  2. Venter, J. C., Adams, M. D., Myers, E. W., Li, P. W., Mural, R. J., Sutton, G. G., et al. (2001) The sequence of the human genome. Science 291, 1304–1351.

    Article  PubMed  CAS  Google Scholar 

  3. Mosser, J., Douar, A.-M., Sarde, C.-O., Kioschis, P., Feil, R., Moser, H., et al. (1993) Putative X-linked adrenoleukodystrophy gene shares unexpected homology with ABC transporters. Nature 361, 726–730.

    Article  PubMed  CAS  Google Scholar 

  4. Moser, H. W. (1997) Adrenoleukodystrophy: phenotype, genetics, pathogenesis and therapy. Brain 120, 1485–1508.

    Article  PubMed  Google Scholar 

  5. Henning, K. A., Li, L., Iyer, N., McDaniel, L. D., Reagon, M. S., Legerski, R., et al. (1995) The Cockayne syndrome group A gene encodes a WD repeat protein that interacts with CSB protein and a subunit of RNA polymerase II TFIIH. Cell 82, 555–564.

    Article  PubMed  CAS  Google Scholar 

  6. Shan, Y., Wang, G., and Zhou, H.-X. (2001) Fold recognition and accurate query-template alignment by a combination of PSI-BLAST and threading. Proteins 42, 23–37.

    Article  PubMed  CAS  Google Scholar 

  7. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleio Acids Res. 25, 3389–3402.

    Article  CAS  Google Scholar 

  8. Holm, L. and Sander, C. (1997) Dali/FSSP classification of three-dimensional protein folds. Nucleic Acids Res. 25, 231–234.

    Article  PubMed  CAS  Google Scholar 

  9. Jones, D. J. (1999) Gen THREADER: an efficient and reliable protein fold recognition method for genomic sequences. J. Mol. Biol. 287, 797–815.

    Article  PubMed  CAS  Google Scholar 

  10. Mushegian, A. R., Bassett, D. E., Boguski, M. S., Bork, P., and Koonin, E. V. (1997) Proc. Positionally cloned human disease genes: patterns of evolutionary conservation and functional motifs. Proc. Natl. Acad. Sci. USA 94, 5831–5836.

    Article  PubMed  CAS  Google Scholar 

  11. Evertt, L. A., Glaser, B., Beck, J. C., Idol, J. R., Buchs, A., Heyman, M., et al. (1997) Pendred syndrome is caused by mutations in a putative sulphate transporter gene (PDS). Nature Genet. 17, 411–422.

    Article  Google Scholar 

  12. Kovacs, H., Comfort, D., Lord, M., Campbell, I. D., and Yudkin, M. D. (1998) Solution structure of SpoIIAA, a phosphorylatable component of the system that regulates transcription factor sigmaF of Bacillus subtilis. Proc. Natl. Acad. Sci. USA 95, 5067–5071.

    Article  PubMed  CAS  Google Scholar 

  13. Hung, L.-W., Wang, I. X., Nikaido, K., Liu, P.-Q., Ames, G. F.-L., and Kim, S.-H. (1998) Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 396, 703–707.

    Article  PubMed  CAS  Google Scholar 

  14. Liu, L. X., Javier, K., Berteaux-Lecellier, V., Cartier, N., Benarous, R., and Auburg, P. (1999) Homo- and heterodimerization of peroxisomal ATP-binding cassette half-transporters. J. Biol. Chem. 274, 32,738–32,743.

    CAS  Google Scholar 

  15. Shani, N., Sapag, A., and Valle, D. (1996) Characterization and analysis of conserved motifs in a peroxisomal ATP-binding cassette transporter. J. Biol. Chem. 271, 8725–8730.

    Article  PubMed  CAS  Google Scholar 

  16. Sondek, J., Bohm, A., Lambridght, D. G., Hamm, H. E., and Sigler, P. B. (1996) Crystal structure of a G-protein beta gamma dimer at 2.1A resolution. Nature 379, 369–374.

    Article  PubMed  CAS  Google Scholar 

  17. Lambright, D. G., Sondek, J., Bohm, A., Skiba, N. P., Hamm, H. E., and Sigler, P. B. (1996) The 2.0 A crystal structure of a heterotrimeric G protein. Nature 379, 311–319.

    Article  PubMed  CAS  Google Scholar 

  18. Murzin, A. G., Brenner, S. E., Hubbard, T., and Chothia, C. (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536–540.

    Article  PubMed  CAS  Google Scholar 

  19. Antonarakis, S. E. and McKusick, V. A. (2000) OMIM passes the 1,000 disease gene mark. Nature Genet. 25, 11.

    Article  PubMed  CAS  Google Scholar 

  20. Jimennez-Sanchez, G., Childs, B., and Valle, D. (2001) Human disease genes. Nature 409, 853–855.

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Huan-Xiang Zhou.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Zhou, HX., Wang, G. Predicted structures of two proteins involved in human diseases. Cell Biochem Biophys 35, 35–47 (2001). https://doi.org/10.1385/CBB:35:1:35

Download citation

  • Issue Date:

  • DOI: https://doi.org/10.1385/CBB:35:1:35

Index Entries

Navigation