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Neuroinformatics

, Volume 4, Issue 4, pp 299–317 | Cite as

Neuroanatomical affiliation visualization-interface system

  • Olivier PalombiEmail author
  • Jae-Won Shin
  • Charles Watson
  • George Paxinos
Original Article

Abstract

A number of knowledge management systems have been developed to allow users to have access tolargequantity of neuroanatomical data. The advent of three-dimensional (3D) visualization techniques allows users to interact with complex 3D object. In order to better understand the structural and functional organization of the brain, we present Neuroanatomical Affiliations Visualization-Interface System (NAVIS) as the original software to see brain structures and neuroanatomical affiliations in 3D.

This version of NAVIS has made use of the fifth edition of “The Rat Brain in Stereotaxic coordinates” (Paxinos and Watson, 2005). The NAVIS development, environment was based on the scripting language name Python, using visualization toolkit (VTK) as 3D-library and wxPython for the graphic user interface. The following manuscript is focused on the nucleus of the solitary tract (Sol) and the set of affiliated structures in the brain to illustrate the functionality of NAVIS. The nucleus of the Sol is the primary relay center of visceral and taste information, and consists of 14 distinct subnuclei that differ in cytoarchitecture, chemoarchitecture, connections, and function. In the present study, neuroanatomical projection data of the rat Sol were collected from selected literature in PubMed since 1975. Forty-nine identified projection data of Sol were inserted in NAVIS. The standard XML format used as an input for affiliation data allows NAVIS to update data online and/or allows users to manually change or update affiliation data. NAVIS can be extended to nuclei other than Sol.

Index Entries

3D visualization data entry process digital atlas functional anatomy nucleus of the solitary tract know ledge management system 

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Copyright information

© Humana Press Inc. 2006

Authors and Affiliations

  • Olivier Palombi
    • 1
    • 2
    Email author
  • Jae-Won Shin
    • 1
  • Charles Watson
    • 3
  • George Paxinos
    • 1
  1. 1.POWMRIThe University of New South WalesRandwickAustralia
  2. 2.GRAVIRJosephe Fourier UniversityGrenobleFrance
  3. 3.Division of Health SciencesCurtin University of TechnologyPerthAustralia

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