Skip to main content
Log in

Direct measurement of compression spring constant of single DNA molecule with AFM

  • Articles
  • Published:
Chinese Science Bulletin

Abstract

In this paper, a new approach is demonstrated to measure the compression elasticity of single biomolecule in small force regime (<0.5 nN) using vibrating mode scanning polarization force microscopy (VSPFM). With this method we investigate the compression elasticity of a single DNA molecule in the radial direction (perpendicular to DNA strands). The radial deformation of DNA molecules deposited on mica surface is shown to be able to reach about 50% under external load, and this remarkable deformation is reversible. In addition, the compression spring constant of DNA molecules is estimated to be about 0.6 nN/nm according to the height-force curves.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Bustamante, C., Bryant, Z., Smith, S. B., Ten years of tension: Single-molecule DNA mechanics, Nature, 2003, 421: 423–427.

    Article  PubMed  Google Scholar 

  2. Hu, J., Zhang, Y., Gao, H. et al., Artificial DNA patterns by mechanical nanomanipulation, Nanoletter, 2002, 2: 55–57.

    CAS  Google Scholar 

  3. Zhang, W. K., Zhang, X., Single molecule mechanochemistry of macromolecules, Prog. Polym. Sci., 2003, 28: 1271–1295.

    Article  CAS  Google Scholar 

  4. Hansma, H. G., Varieties of imaging with scanning probe microscopes, Proc. Natl. Acad. Sci. USA, 1999, 96: 14678–14680.

    Article  PubMed  CAS  Google Scholar 

  5. Wu, S. Y., Zhang, Y., Lei, X. L. et al., The catenary-like nano-patterns of individual DNA molecules constructed by liquid flow manipulation, Chinese Physics (in Chinese), 2002, 51: 1887–1891.

    CAS  Google Scholar 

  6. Zhang, X., Wang, C., Zhang, X., Single molecules force spectroscopy, Chinese Sci. Bull, (in Chinese), 2003, 48: 1113–1126.

    Google Scholar 

  7. Bryant, Z. et al., Structural transitions and elasticity from torque measurements on DNA, Nature, 2003, 424: 338–341.

    Article  PubMed  CAS  Google Scholar 

  8. Goodman, S. D., Nash, H. D., Functional replacement of a protein-induced bend in a DNA recombination site, Nature, 1989, 341: 251–254.

    Article  PubMed  CAS  Google Scholar 

  9. Tsai, L., Sun, Z. R., Dynamic flexibility in the Escherichia coli genome, FEBS Lett., 2001, 507: 225–230.

    Article  PubMed  CAS  Google Scholar 

  10. Rief, M., Fernandez, J. M., Gaub, H. E., Elastically coupled two-level systems as a model for biopolymer extensibility, Phys. Rev. Lett., 1998, 81: 4764–4767.

    Article  CAS  Google Scholar 

  11. Smith, S. B., Cm, Y., Bustamante, C., Overstretching B-DNA: The elasticity response of individual double-stranded and single-stranded DNA molecules, Science, 1996, 271: 795–799.

    Article  PubMed  CAS  Google Scholar 

  12. Zhou, H., Zhang, Y., Ou-Y, Z.-C, Bending and base-staking interactions in double-stranded DNA, Phys. Rev. Lett., 1999, 82: 4560–4563.

    Article  CAS  Google Scholar 

  13. Hu, J. et al., Imaging the condensation and evaporation of molecularly thin films of water with nanometer resolution, Science, 1995, 268: 267–269.

    Article  PubMed  CAS  Google Scholar 

  14. Hu, J., Xiao, X., Salmeron, M., Scanning polarization force microscopy: A technique for imaging liquids and weakly adsorbed layer, Appl. Phys. Lett., 1995, 67: 476–478.

    Article  CAS  Google Scholar 

  15. Li, X.-J. et al., Height measurement of dsDNA and antibodies adsorbed on solid substrate in air by vibration mode scanning polarization force microscopy, J. Val. Sci. Tech. B, 2003, 21: 1070–1073.

    Article  CAS  Google Scholar 

  16. Moreno-Herrero, F., Colchero, J., Bar, A. M., DNA height in scanning force microscopy, Ultramicroscopy, 2003, 96: 167–174.

    Article  PubMed  CAS  Google Scholar 

  17. Garcia, R., Pérez, R., Dynamic atomic force microscopy methods, Surf. Sci. Rep., 2002, 47: 197–301.

    Article  CAS  Google Scholar 

  18. Fain, S. C. et al., Measuring average tip-sample forces in intermittent-contact (tapping) force microscopy in air, Appl. Phys. Lett., 2000, 76: 930–932.

    Article  CAS  Google Scholar 

  19. Su, C., Huang, L., Kjoller, K., Direct measurement of tapping force with a cantilever deflection, Ultramicroscopy, 2004, 100: 233–238.

    Article  PubMed  CAS  Google Scholar 

  20. Thomson, N. H.et al., R957versible binding of DNA to mica for AFM imaging, Langmuir, 1996, 12: 5905–5908.

    Article  Google Scholar 

  21. Zaccai, G., How soft is a protein? A protein dynamics force constant measured by neutron scattering, Nature, 2000, 288: 1604–1607.

    CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Sun Jielin or Hu Jun.

About this article

Cite this article

Xingfei, Z., Hongjie, A., Yunchang, G. et al. Direct measurement of compression spring constant of single DNA molecule with AFM. Chin.Sci.Bull. 50, 954–957 (2005). https://doi.org/10.1360/982005-161

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1360/982005-161

Keywords

Navigation