Abstract
The shikimate pathway enzyme 5-enolpyruvylshikimate 3-phosphate synthase (EPSPs) is the target of nonselective herbicide glyphosate. A partial rice epsps cDNA was generated by RT-PCR with primers designed according to EST sequence in GenBank and used as probe for rice genomic library screening. In a screen of approximately 8.0 ×104 clones from the rice genomic library, sixteen positive clones were obtained, which strongly hybridized to the probe. One clone, E11, was selected for further analysis and the full-length 3661 bp rice epsps genomic sequence was obtained. Sequence analysis and homologous comparison revealed that epsps gene is composed of 8 exons and 7 introns. Analysis by restriction fragment length polymorphism with the probe of rice epsps cDNA fragment confirmed that rice epsps is located on chromosome 6 with an indicajaponica (ZYQ8-JX17) double-haploid (DH) population. This is the first report on the EPSP synthase from monocotyledons.
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Gollub, E., Zackin, H., Sprinson, D. B., Correlation of genes and enzymes, and studies on regulation of the aromatic pathway in Salmonella, J. Biol. Chem., 1967, 242: 5323–5328.
Steinrücken, H. C., Amihein, N., The herbicide glyphosate is a potent inhibitor of 5-enolpyruvyl shikimic acid 3-phosphate synthase, Biochem. Biophys. Res. Commum., 1980, 94: 1207–1212.
Chen, L. H., Wang, X. W., Zhang, W. J. et al., Transformation of common wheat (Triticum aestivum L.) with herbicide-resistant EPSPs gene, Acta Genetica Sinica (in Chinese), 1999, 26(3): 239–243.
Ye, G. N., Hajdukiewicz, P. T., Broyles, D. et al., Plastid-expressed 5-enol-pyruvyl-shikimate 3-phosphate synthase genes provide high level glyphosate tolerance in tobacco, Plant J., 2001, 25(3): 261–270.
Shah, D. M., Horsch, R. B., Klee, H. J. et al., Engineering herbicide tolerance in transgenic plants, Science, 1986, 233: 478–481.
Duncan, K., Lewendon, A., Coggins, J. R., The complete amino acid sequence of Escherichia coli 5-enol-pyruvyl-shikimate-3-phosphate synthase, FEBS Lett., 1984, 170: 59–63.
Charles, G., Keyte, J. W., Brammar, W. J. et al., Structure and nucleotide sequence of the complex AROM locus of Aspergillus nidulans, Nucleic Acids Res., 1986, 14: 2201–2213.
Gasser, C. S., Winter, J. A., Hironaka, C. M. et al., Structure, expression and evolution of the 5-enol-pyruvyl-shikimate 3-phosphate synthase genes of petunia and tomato, J. Bio. Chem., 1988, 263(9): 4280–4289.
Klee, H. J., Muskopf, Y. M., Gasser, C. S., Cloning of an Arabidopsis thaliana gene encoding 5-enol-pyruvyl-shikimate 3-phosphate synthase: sequence analysis and manipulation to obtain glyphosate-tolerant plant, Mol. Gen. Gent., 1987, 210: 437–442.
Forlanni, G., Parisi, B., Nielsen, E., 5-enol-pyruvyl-shikimate 3-phosphate synthase from Zea mays cultured cells, Plant Physiol., 1994, 105: 1107–1114.
Ream, J. E., Steinrücken, H. C., Porter, C. A. et al., Purification and properties of 5-enolpyruvyl shikimate 3-phosphate synthase from dark-grown seedlings of Sorghum biocolor, Plant Physiol., 1988, 87: 232–238.
Liu, Y. G., Shirano, Y., Fakaki, H. et al., Complementation of plant mutants with large genomic DNA fragments by a transformation-competent artificial chromosome vector accelerates positional cloning, Proc. Natl. Acad. Sci. USA, 1999, 96: 6535–6540.
Gao, Y. F., Zhu, Z., Xiao, G. F. et al., Isolation of soybean kunitz trypsin inhibitor gene and its application in plant insect-resistant genetic engineering, Acta Botanica Sinica (in Chinese), 1998, 40: 405–411.
Sambrook, J., Fritsch, E. F., Maniatis, T., Molecular Cloning: A Laboratory Manual, 2nd ed., New York: Cold Spring Harbor Laboratory Press, 1989.
He, P., Li, S. G., Qian, Q. et al., Genetic analysis of rice grain quality, Thero. Appl. Genet., 1999, 98: 502–508.
Lander, E. S., Green, P., Abrahamson, J. et al., MAPMAKER: An interactive computer package for construction of primary genetic linkage maps of experimental and natural populations, Genomics, 1987, 1: 174–181.
Breathnach, R., Chambon, P., Organization and expression of eukaryotic split genes coding for proteins, Annu. Rev. Biochem., 1981, 50: 349–383.
Ahn, S., Anderson, J. A., Sorrells, M. E. et al., Homoeologous relationships of rice, wheat and maize chromosomes, Mol. Gen. Genet., 1993, 241: 483–490.
James, C., Globle status of commercialized transgenic crops, ISAAA Briefs, 1999, (12).
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Junwang, X., Dejiang, F., Xugang, L. et al. Cloning of genomic DNA of rice 5-enolpyruvylshikimate 3-phosphate synthase gene and chromosomal localization of the gene. Sci. China Ser. C.-Life Sci. 45, 251–259 (2002). https://doi.org/10.1360/02yc9028
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DOI: https://doi.org/10.1360/02yc9028