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Baseline proteomic biomarkers for predicting chemotherapy-induced cardiotoxicity in breast cancer patients

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  • Published: 26 August 2026
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Baseline proteomic biomarkers for predicting chemotherapy-induced cardiotoxicity in breast cancer patients
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  • Li-Rong Yu1,
  • Zhijun Cao1,
  • Dong Wang2,
  • Jaclyn R. Daniels1,
  • Valentina K. Todorova3,
  • Issam Makhoul3,6,
  • V. Suzanne Klimberg3,7,8,
  • Jeanne Wei3,
  • Jane P. F. Bai4,
  • Julia Tait Lathrop5,
  • Majda Haznadar Uskievich5,
  • Jinong Jenn Li4,
  • William Mattes1 &
  • …
  • Richard D. Beger1 
  • 43 Accesses

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We’re sharing this article early to provide faster access to peer-reviewed, accepted research. It is citable and carries a permanent DOI. This version is subject to further edits and will be replaced automatically by the final Version of Record. All legal disclaimers apply.

Abstract

Background

Currently, there are no reliable biomarkers to identify patients at high risk of treatment-related cardiotoxicity before initiation of chemotherapy. The aim of this study was to identify biomarkers for predicting asymptomatic decrease in left ventricular ejection fraction (LVEF) after doxorubicin (DOX)-based chemotherapy.

Methods

A total of 83 breast cancer patients were treated with DOX-based chemotherapy. LVEF was measured before initiation and after completion of therapy. Thirty-nine patients were randomly assigned to the biomarker discovery cohort in which 9 had asymptomatic LVEF reduction (> 10% absolute reduction) after completing the therapy. The remaining 44 patients were grouped into the biomarker validation cohort in which 10 experienced asymptomatic LVEF reduction. Baseline plasma samples from the discovery cohort were analyzed by the SOMAscan proteomic assays for biomarker discovery. Biomarkers were verified using Olink proteomic assays in the validation cohort. Predictive models were generated using partial least squares discriminant analysis.

Results

SOMAscan analysis for the biomarker discovery cohort revealed that baseline plasma levels of biglycan, carbonic anhydrase 6, cadherin-5, CD109, and thrombospondin-4 were higher, and cystatin-F was lower in the patients with asymptomatic LVEF reduction compared to those without. The levels of these proteins were verified in the validation cohort and associated with increased odds of asymptomatic LVEF reduction. Among the individual protein biomarkers, thrombospondin-4 achieved the highest accuracy of prediction for asymptomatic LVEF reduction (79.5% [95% CI, 64.7%-90.2%]). A predictive model using these 6 proteins, in combination with baseline LVEF, was able to predict asymptomatic LVEF reduction with a sensitivity of 80% (95% CI, 44.4%-97.5%), a specificity of 88% (95% CI, 72.5%-96.7%), and overall accuracy of 86% (95% CI, 72.6%-94.8%).

Conclusions

These biomarkers and the model are potential new tools for the prediction of DOX-based treatment-related cardiotoxicity and the stratification of breast cancer patients before the initiation of chemotherapy. However, large-scale multi-center validation studies are required.

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  • Cardiovascular Toxicity in Cancer Therapy

Abbreviations

CA6:

Carbonic anhydrase 6

CD109:

CD109 antigen

cTnT:

Cardiac troponin T

DOX:

Doxorubicin

ER:

Estrogen receptor

HER2:

Human epidermal growth factor receptor 2

LVEF:

Left ventricular ejection fraction

PLS-DA:

Partial least squares discriminant analysis

PR:

Progesterone receptor

TSP4:

Thrombospondin-4

Acknowledgements

JRD would like to acknowledge the support by an appointment to the ORISE Research Participation Program at the National Center for Toxicological Research (NCTR), U.S. FDA, administered by the Oak Ridge Institute for Science and Education through an interagency agreement between the U.S. Department of Energy and FDA/NCTR.

Disclaimer

This article reflects the views of the authors and does not necessarily reflect those of the U.S. Food and Drug Administration. Any mention of commercial products is for clarification only and is not intended as approval, endorsement, or recommendation.

Funding

This work was supported by the U.S. Food and Drug Administration (FDA) Office of Women’s Health, the FDA Chief Scientist Challenge Grant, and the Inter-Center funds from the FDA Center for Drug Evaluation and Research.

Author information

Authors and Affiliations

  1. Division of Systems Biology, National Center for Toxicological Research, U.S. Food and Drug Administration, Jefferson, AR, USA

    Li-Rong Yu, Zhijun Cao, Jaclyn R. Daniels, William Mattes & Richard D. Beger

  2. Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, U.S. Food and Drug Administration, Jefferson, AR, USA

    Dong Wang

  3. University of Arkansas for Medical Sciences, Little Rock, AR, USA

    Valentina K. Todorova, Issam Makhoul, V. Suzanne Klimberg & Jeanne Wei

  4. Center for Drug Evaluation and Research, U.S. Food and Drug Administration, Silver Spring, MD, USA

    Jane P. F. Bai & Jinong Jenn Li

  5. Center for Biologics Evaluation and Research, U.S. Food and Drug Administration, Silver Spring, MD, USA

    Julia Tait Lathrop & Majda Haznadar Uskievich

  6. Present addresses: Central Arkansas Radiation Therapy Institute (CARTI), Little Rock, AR, USA

    Issam Makhoul

  7. Present addresses: University of Texas Medical Branch, Galveston, TX, USA

    V. Suzanne Klimberg

  8. Present addresses: Anderson Cancer Center, Houston, TX, USA

    V. Suzanne Klimberg

Authors
  1. Li-Rong Yu
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  2. Zhijun Cao
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Corresponding author

Correspondence to Li-Rong Yu.

Ethics declarations

Ethics approval and consent to participate

This study was approved by the Institutional Review Board (IRB) of the University of Arkansas for Medical Sciences (IRB# 130212) and the U.S. Food and Drug Administration IRB—Research Involving Human Subjects Committee (RIHSC# 14-033 T). Written informed consent was obtained from each patient.

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The authors declare no competing interests.

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Supplementary Material 1 (download DOCX )

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Cite this article

Yu, LR., Cao, Z., Wang, D. et al. Baseline proteomic biomarkers for predicting chemotherapy-induced cardiotoxicity in breast cancer patients. Cardio-Oncology (2026). https://doi.org/10.1186/s40959-026-00559-y

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  • Received: 25 March 2026

  • Accepted: 13 August 2026

  • Published: 26 August 2026

  • DOI: https://doi.org/10.1186/s40959-026-00559-y

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Keywords

  • Biomarker
  • Cardiotoxicity
  • Doxorubicin
  • Left ventricular ejection fraction
  • Predictive model
  • Proteomics assay

Ask a research question

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  • Can baseline proteomic biomarkers predict asymptomatic LVEF reduction post-chemotherapy?
  • How can biomarkers improve risk stratification for chemotherapy-induced cardiotoxicity?
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