|
Strain
|
Methodology
|
Deletions
|
Amplifications
|
Overall
|
|---|
|
HB3
|
FREEC
|
—
|
—
|
195/210 (92.9%)
|
| |
cn.MOPS
|
—
|
—
|
214/348 (61.5%)
|
| |
PG with γ=99%
|
—
|
—
|
431/568 (75.9%)
|
| |
PG with γ=99.9%
|
—
|
—
|
288/365 (78.9%)
|
|
DD2
|
FREEC
|
—
|
—
|
792/831 (95.3%)
|
| |
cn.MOPS
|
—
|
—
|
746/840 (88.8%)
|
| |
PG with γ=99%
|
—
|
—
|
854/957 (89.0%)
|
| |
PG with γ=99.9%
|
—
|
—
|
826/899 (91.9%)
|
|
7G8
|
FREEC
|
89/154 (57.8%)
|
285/470 (60.6%)
|
374/624 (59.9%)
|
| |
cn.MOPS
|
91/477 (19.1%)
|
236/1185 (19.9%)
|
327/1662 (19.7%)
|
| |
PG with γ=99%
|
164/243 (67.5%)
|
216/343 (63.0%)
|
380/586 (64.9%)
|
| |
PG with γ=99.9%
|
153/205 (75.6%)
|
176/215 (81.9%)
|
329/420 (78.3%)
|
|
GB4
|
FREEC
|
32/82 (39.0%)
|
4/16 (25.0%)
|
36/98 (36.7%)
|
| |
cn.MOPS
|
77/197 (39.1%)
|
28/273 (10.3%)
|
105/470 (22.3%)
|
| |
PG with γ=99%
|
152/262 (59.0%)
|
24/108 (22.2%)
|
176/370 (47.6%)
|
| |
PG with γ=99.9%
|
148/253 (58.5%)
|
14/47 (29.8%)
|
162/300 (54.0%)
|
- CGH hits of HB3 and DD2 lab strains were taken from Samarakoon et al.[19], while CGH hits of 7G8 and GB4 lab strains were obtained by re-analysing the corresponding original data available from Jiang et al.[37]. The percentages in brackets are in relation to the total number of coverage hits produced by the corresponding method.