| |
PG with γ=99.9% vs FREEC
| |
PG with γ=99.9% vs cn.MOPS
|
---|
CNV
|
Sample
|
|
|
| |
|
|
|
---|
Deletions
|
HB3
|
175 (55.2)
|
130 (41.0)
|
12 (3.8)
| |
195 (63.5)
|
110 (35.8)
|
2 (0.7)
|
|
DD2
|
175 (63.9)
|
90 (32.8)
|
9 (3.3)
| |
152 (57.4)
|
113 (42.6)
|
0 (0.0)
|
|
7G8
|
81 (29.1)
|
124 (44.6)
|
73 (26.3)
| |
120 (21.4)
|
85 (15.1)
|
357 (63.5)
|
|
GB4
|
72 (27.4)
|
181 (68.8)
|
10 (3.8)
| |
150 (50.0)
|
103 (34.3)
|
47 (15.7)
|
|
OX005
|
153 (51.0)
|
121 (40.3)
|
26 (8.7)
| |
205 (69.3)
|
69 (23.3)
|
22 (7.4)
|
|
OX006
|
93 (55.0)
|
74 (43.8)
|
2 (1.2)
| |
62 (37.1)
|
105 (62.9)
|
0 (0.0)
|
Amplifications
|
HB3
|
19 (29.7)
|
41 (64.1)
|
4 (6.3)
| |
23 (12.2)
|
37 (19.7)
|
128 (68.1)
|
|
DD2
|
586 (84.3)
|
48 (6.9)
|
61 (8.8)
| |
608 (85.2)
|
26 (3.6)
|
80 (11.2)
|
|
7G8
|
187 (37.6)
|
28 (5.6)
|
283 (56.8)
| |
212 (17.8)
|
3 (0.3)
|
973 (81.9)
|
|
GB4
|
6 (10.5)
|
41 (71.9)
|
10 (17.5)
| |
38 (11.8)
|
9 (2.8)
|
274 (85.4)
|
|
OX005
|
62 (4.2)
|
130 (8.8)
|
1291 (87.1)
| |
168 (5.7)
|
24 (0.8)
|
2473 (93.5)
|
|
OX006
|
27 (22.9)
|
63 (53.4)
|
28 (23.7)
| |
64 (20.9)
|
26 (8.5)
|
216 (70.6)
|
- The frequencies (and the respective percentages in brackets) refer to the number of hits shared and exclusively detected by the PG model against FREEC and cn.MOPS, where
PG-FREEC
and
PG-cn.MOPS
denote the hits shared between the respective pair of methods,
PG
,
FREEC
and
cn.MOPS
denote the exclusive hits produced by the corresponding methodology in the respective comparison. Percentages are in relation to the overall number of deletions and amplifications identified by the respective pair of methods.