Deconstructing Indian cotton: weather, yields, and suicides
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Cotton with coevolving pests has been grown in India more than 5000 years. Hybrid cotton was introduced in the 1970s with increases in fertilizer and in insecticide use against pink bollworm that caused outbreaks of bollworm. Hybrid Bt cotton, introduced in 2002 to control bollworm and other lepidopteran pests, is grown on more than 90 % of the cotton area. Despite initial declines, year 2013 insecticide use is at 2000 levels, yields plateaued nationally, and farmer suicides increased in some areas. Biological modeling of the pre-1970s cotton/pink bollworm system was used to examine the need for Bt cotton, conditions for its economic viability, and linkage to farmer suicides.
Yields in rainfed cotton depend on timing, distribution, and quantity of monsoon rains. Pink bollworm causes damage in irrigated cotton, but not in rainfed cotton unless infested from irrigated fields. Use of Bt cotton seed and insecticide in rainfed cotton is questionable.
Bt cotton may be economic in irrigated cotton, whereas costs of Bt seed and insecticide increase the risk of farmer bankruptcy in low-yield rainfed cotton. Inability to use saved seed and inadequate agronomic information trap cotton farmers on biotechnology and insecticide treadmills. Annual suicide rates in rainfed areas are inversely related to farm size and yield, and directly related to increases in Bt cotton adoption (i.e., costs). High-density short-season cottons could increase yields and reduce input costs in irrigated and rainfed cotton. Policy makers need holistic analysis before new technologies are implemented in agricultural development.
KeywordsEcological disruption Bt cotton Weather Yields Suicides Bio-economics Physiologically based demographic models GIS Climate change
The coefficient of variation
Geographic information systems (mapping technology)
Genetically modified organism (e.g., Bt cotton)
Physiologically based demographic model
Native diploid “Desi” cottons (varieties of Gossypium arboreum L. and G. herbaceum L) have been grown in India for more than 5000 years without synthetic inputs  (i.e., functionally whether or not certified organically). Cotton was also domesticated in Africa and the Americas, and for all but the past 180 years, India was the center of world cotton innovation (see Additional file 1 for a review of the agronomic and political history). Cotton was the target of strong selection and adaptation by Indian farmers, but several agronomic changes altered the ecology and economics of cotton production in India as cotton became the raw material for the world’s largest manufacturing industry—cotton textiles through the first half of the Industrial Revolution . Starting in 1790, new world cottons (chiefly G. hirsutum L. and later G. barbadense L.) were introduced  with F1 hybrid cotton (normally G. hirsutum) introduced in the 1970s  ushering in high use of insecticide and fertilizer [4, 5]. Planting of transgenic (i.e., genetically modified) F1 hybrid Bt cottons expressing endotoxins of the soil bacterium Bacillus thuringiensis for control of lepidopteran pests began in 2002 , and by 2012, more than 1128 Bt hybrid varieties of variable quality were planted on 92 % of the cotton area [2, 7]. Seed from F1 hybrid plants are fertile but are not usually saved for planting by farmers because they produce variable phenotypes, and hence seed must be purchased annually.
Worldwide, cotton is attacked by ecologically similar complexes of insect herbivores (see Additional file 1). In India, before the widespread use of insecticide, the key pest of cotton was the cosmopolitan stenophagous semi-tropical pink bollworm (Pectinophora gossypiella Saunders; hereafter pink bollworm (PBW))) and also generalists such as jassids (Amrasca biguttula Ishida), spotted bollworm (Earias vitella Fabricius), and defoliators such as Spodoptera litura (Fabricius) [8, 9]. PBW is thought to be of South Asian, Papua New Guinea, and North Australian origins  and historically has been a pest in long-season cotton grown more than 180 days . Natural control of PBW is weak, and it can cause high late-season damage if not controlled.
Before the introduction of Bt cotton, insecticide was used to control pink bollworm, and as has occurred worldwide wherever PBW infests cotton, insecticide use caused ecological disruption due to the destruction of generalist natural enemies resulting in the resurgence of PBW, outbreaks of formerly secondary pests, insecticide resistance, and adverse ecological and human health effects [11, 12, 13]. In India, pesticide use in all crops peaked in the 1990s at 75,000 metric tons of active ingredient. Insecticides were 80 % of this total, and 40 to 50 % was applied to cotton . The use of pyrethroids and organo-phosphate insecticides induced outbreaks of the polyphagous bollworm (Helicoverpa armigera (Hübner)), whitefly (Bemisia tabaci (Gennadius)), and other pests  that proved more damaging and difficult to control than PBW [8, 9]. Prior to the 1970s, when high insecticide use began, bollworm and whitefly were minor pests in Indian cotton, but by 2002, when Bt cotton was introduced, 75 % of insecticide use in cotton was for bollworm control . Insecticide resistance was found in the defoliator S. litura in the late 1980s and in several other pests including pink bollworm and bollworm in the 1990s . The inescapable conclusion is that Bt cotton was introduced to India to solve a bollworm problem created by insecticide use [9, 14].
The introduction of Bt cotton generated considerable controversy [15, 16] as some linked high suicide rates among cotton farmers to Bt cotton adoption  while others dismissed the links [18, 19]. Unrealistic claims of 70–80 % increases in yield , and 17–20 % increases nationally [18, 19, 21] entered the literature with some questioning these conclusions . The above biology and controversy are imbedded in the historical economic, political, social (religion, caste, level), and ecological milieu of rural India and are background for our analysis of cotton production in India .
Because insecticides induce outbreaks of bollworm and other secondary pests (see Additional file 1), we first assess the historical baseline relationship of non-Bt cotton and PBW to understand the ecology of cotton production in India before heavy pesticide use and bollworm outbreaks began. In the process, we explain why despite conjectured high pest pressure, organic cotton continues to be grown in India. In order, the distribution of cotton in India is reviewed, and the ecology of irrigated and rainfed non-Bt cotton and PBW is examined in detail using the Yavatmal district, Maharashtra (MH) state, in central India as an example. The analysis is then extended to rainfed cotton across the agro-ecological zones of India with special focus on the central and southern states of Andhra Pradesh (AP), Gujarat (GJ), Karnataka (KA), and Maharashtra (MH) where rainfed cotton predominates and where most of the farmer suicides have occurred. The study assesses the effects of weather on cotton yield and on risk. Three interrelated issues are addressed: was Bt cotton in irrigated and rainfed areas needed to solve pest problems, does it give economic benefits, and is its adoption linked to increases in farmer suicides.
Distribution of cotton
Irrigated non-Bt cotton at Yavatmal
Rainfed non-Bt cotton at Yavatmal, MH
At Yavatmal, the time and intensity of the monsoon rains (Fig. 3b, c) determine the time and success of seed germination, season length, and yield (Fig. 3d). Soil fertility is assumed not limiting, whereas available soil moisture is shown in Fig. 3c with the horizontal dashed line indicating the wilting point. For example, early monsoon rains during 2001 germinated the seed but were insufficient to sustain full growth with water stress during July slowing plant growth (Fig. 3d). Late rains in August 2001 were not timely enough for the crop to recoup yield potential. Water stress also occurred during 2002 and 2003 and influenced yields. Emergence of PBW adults from dormancy during spring and summer is poorly timed with cotton fruiting, and sizeable PBW populations failed to develop (not shown).
Pest interactions between irrigated and rainfed cotton
Rainfed cotton production in India
In this section, we first assess rainfed cotton production across the agro-ecological zones of India and then focus on the states of AP, GJ, KA, and MH.
Rainfed yields increase with dd and the interaction dd × rainfall, but decrease with rainfall (Eq. 2). In the absence of pests and using average values (dd = 2361, rainfall = 1430 mm), marginal analysis (dy/dxi) suggests that rainfall contributes 0.230 kg ha−1 mm−1 of rain to potential yield given the average effects of dd, while dd contributes 0.278 kg ha−1 dd−1 given the average effects of rainfall.
Here we review some economic studies on the benefits of Bt cotton adoption, the biological and ecological underpinnings of the Indian cotton system, and the question of whether the Bt cotton technology was needed, under what conditions might it give economic benefits, is its adoption linked to farmer suicide, who might profit from Bt cotton adoption, and lastly how climate change will impact rainfed cotton production.
Review of the economics of Bt cotton adoption
Numerous economic studies based on field experiments and survey data have found economic benefits for Bt cotton adoption in India , and yet, controversy persists (see the cogent expośe by Stone ). Econometric analyses ignore the underpinning ecology of the system and disregard underlying agro-ecological principles of yield formation (see Additional file 1) . In particular, prior economic studies of Indian cotton compared the failed insecticide technology to the Bt technology option, ignoring the question of whether either technology was needed in the first place. Econometric analyses tell little about the root causes of the problem being evaluated or alternatives to the current production system and, most important, provide little insight into what is foremost an ecological problem with economics superimposed [16, 41]. Specifically, studies in ecologically disturbed environments limited to isolated small plots typical of published results from India, rather than in larger landscape and historical frameworks, are known to bias results against untreated checks (see [34, 42, 43, 44]), inputs such as fertilizer and water are often not experimentally controlled , in south-central India, ground water is being used unregulated and unpriced , industry data have been used to predict unrealistic estimates of potential yield , and generally, important agronomic aspects of the systems (e.g., irrigated vs. rainfed, planting density, varieties, pest dynamics, etc.) and the crucial effects of weather are ignored. For example, higher yields were found for Bt compared to conventional cotton , but in critique of this and related studies, a high degree of variation in productivity and profits with other social and economic explanations was found for yield differences including a “placement bias” of irrigation and “good growing conditions” . Insecticides continue to be used in Bt cotton in India, and as in China productivity effects of Bt cotton and pesticide use likely depend on the action of natural control agents with the profitability of damage control measures increasing with the severity of ecosystem disruption due to insecticides .
Biological and ecological underpinnings
Economic analyses commonly assume that cotton pests must be controlled to prevent economic losses. However, in an 11-year study of rainfed cotton at Nagpur, MH, India (near Yavatmal) using the non-Bt G. hirsutum hybrid NHH-44 under organic and conventional practices, Blaise  found higher yields and lower pest damage in organic cotton. Fundamental to understanding this result is that annual emergence of the key pest PBW in spring is poorly timed to attack rainfed cotton and absent high inoculum from irrigated cotton (Fig. 5), large PBW populations fail to develop in non-Bt rainfed cotton. This biology reduces and usually obviates the need for Bt cotton and disruptive insecticides (see Figs. 3 and 5), thus avoiding ecological disruption and outbreaks of bollworm and other secondary pests (sensu ) that may be far more damaging and difficult to control than PBW [8, 9]. Prior to 1970, bollworm was not an important pest in Indian cotton .
That insecticide can induce pest outbreaks in Indian cotton has abundant parallels worldwide [11, 12, 34, 47, 49, 50, 51]. A well-documented example is irrigated industrial cotton in the Central Valley of California during the 1960s and 1970s. While PBW is limited there by winter temperatures , insecticide was used to control a presumed pest, the plant bug Lygus hesperus Knight. The insecticide induced severe outbreaks of bollworm, defoliators, and the resurgence of Lygus [34, 51, 53, 54, 55] (see Additional file 1), and the studies over several years showed that compared to the insecticide treatments, higher yields of the same quality accrued in the very large untreated check areas [34, 51]. Central Valley farmers had been spending money on insecticide to lose money on lower yields causing economist U. Regev  to call this the first documented case of market failure in pest control . Bt cotton has not made inroads in the Central Valley of California though herbicide tolerant cotton is grown .
More germane to India is irrigated cotton in the desert valleys of southern California and Arizona where the invasive PBW caused heavy losses during the mid-1970s to the mid-1980s, and insecticide use for its control caused severe outbreaks of bollworms, budworms, defoliators, and whiteflies [11, 27, 57]. The problem was initially solved using high-density short-season cotton that produced high yields, but the technology requires early crop termination and plowing of the stubble to destroy residual dormant PBW populations (see Additional file 1) . Short-season cotton was replaced by fertile Bt cotton despite no increases in yield because implementation requirements were less stringent, it gives excellent control of PBW , and in an industrial setting, the costs of the Bt technology are an acceptable cost-effective alternative to short-season cotton (see Additional file 1). Bt cotton is “softer” on natural enemies than insecticides [59, 60] enabling reductions in insecticide use  that allows secondary pests (e.g., bollworms, budworms, whiteflies) to recede to prior low pest status . Though not significantly different, mean natural enemy densities in Bt cotton are consistently lower than those in unsprayed non-Bt cotton , and the efficacy of some natural enemies is reduced when feeding on Bt-intoxicated prey [63, 64]. For pests such as bollworms and defoliators having high reproductive capacities (500–1000 eggs/female/week) or pests with high tolerance to Bt toxins (e.g., plant bugs, whiteflies, and mealybugs), a small reduction in natural enemy density and efficacy may increase pest density and trigger insecticide use and ecological disruption . Plant bugs have increased in Bt cotton in China and the USA, but this has been dismissed as due to reduced pesticide use [58, 65, 66, 67], despite strong evidence that insecticide use increases plant bug resurgence [33, 55] (see Additional file 1). In India and Pakistan, sucking insect pests had been of minor concern in cotton but are now increasing in Bt cotton and contribute to yield losses and increased insecticide use [68, 69].
In sharp contrast to industrial cotton farms globally, most Indian cotton farms in south-central India are <1 ha and are rainfed. Furthermore, F1 Bt hybrids are sold as a value-capture mechanism to discourage seed saving by millions of small farmers who cannot be controlled by threats of lawsuits as occurs in industrial agriculture in more developed areas. Single toxin hybrids may produce 25 % non-Bt seeds and 6.25 % in two toxin hybrids with the seasonal expression of Cry2Ab having a wide range with the levels being tenfold higher than for Cry1Ac . Quality control of Bt seed in India is lax ; resistance to Bt occurs in PBW [70, 71, 72] and in bollworm [2, 73, 74]; and as elsewhere susceptibility to Bt toxins varies greatly among pests (Additional file 1) with insecticide resistance in Bt tolerant pests further complicating pest control [9, 14]. Insecticide use, while initially lower in Bt cotton, has greatly increased against sucking pests [69, 75] (Additional file 1: Table S1)
The need for Bt cotton in India must be reevaluated on biological and economic grounds  using properly unbiased field experiment unfettered by onerous corporate intellectual property constraints. These constraints were outlined in a 2009 letter to the US Environmental Protection Agency from 26 leading university entomologists from the US corn-belt protesting the restricted access to GMO seeds for experimental purposes: “…No truly independent research can be legally conducted on many critical questions involving these [GMO] crops” . Corporate intellectual property constraints on GMO crops are an impediment worldwide to system-level analysis.
Does Bt cotton provide economic advantage?
Average profits per ha in rainfed cotton are computed as revenues from the sale of seed cotton minus average costs of seed, insecticide, and other production costs. On the revenue side, during 2002 to 2013 cotton prices (e.g., Bengal Desi) ranged from Rs 1875 to 4583/100 kg of seed cotton (i.e., ~$0.31–$0.75/kg assuming Rs 61 per $) . A midrange value of $0.51/kg is used in our calculations. Prior to the advent of hybrid varieties, seed costs were nil to low (Rs 8–9/kg), but as fertile local varieties became unavailable, farmers increasingly bought F1 hybrid seed that for Bt varieties cost ~Rs 2111 per kg. Two kg of seed are required at traditional planting densities of two plants/m2 (~$69 ha−1), but optimal planting densities may be threefold or much higher, depending on the variety (see Additional file 1). At the traditional density, the cost of seed plus insecticide was Rs 5500 ha−1 (~$90 ha−1) for both Bt adopters and non-adopters  with an additional Rs 5386 for other production costs . These prices vary in time and region, and hence, they must be viewed as reference values.
In rainfed areas, low yields and high variability are substantial sources of risk [22, 77] (see Figs. 4 and 7), with the high costs of Bt cotton seed and continued use of insecticide being added destabilizing factors. Debt has long been a dominating factor in Indian agriculture, and recently, official sources of credit have greatly decreased, and usury costs (5–10 % per month) to money lenders and others sources have become an added burden for poor farmers seeking to fund new technology adoption .
Did Bt cotton increase yield?
The post-2004 yield data appear to be on the same increasing trend (dashed line in Fig. 9a) as before the introduction of Bt cotton when improved hybrid varieties began entering the market. We posit that the stippled area below the dashed line is a rough estimate of yield loss commonly observed in ecologically disrupted cotton systems with increasing insecticide resistance (e.g., California). Cotton in MH is predominantly rainfed, and yields before 2002 were increasing, but the level was well below the national average (Fig. 9b), while yield gains in AP were flat (not shown). Yield stagnation occurred nationally during the period 2005 to 2013 at about ~510-kg lint cotton ha−1 [2, 75] (see Additional file 1: Table S1). Yields in GJ and AP peaked before 2007 and then declined sharply, while yields in MH and KA continued to increase (Fig. 9c).
Are farmer suicides linked to Bt cotton adoption?
The reason for individual suicides is varied, and in India, it must be viewed against the webbed nuance of social (e.g., caste, religious and cultural), ecological, and economic factors of Indian agricultural society (see ).
Revisiting the raw annual suicide data for AP, GJ, KA, and MH during the period 2001–2010 , 86,607 of 549,414 suicides were by farmers, and 87 % were males with the numbers peaking in the 30–44 age class (Additional file 1). Details concerning cotton cultivation, farm size, and other important factors were not reported for each suicide, and hence, as in , we were forced to aggregate the data by state. Total suicides per year per state were regressed singly on states averages of proportion of area seeded to rainfed cotton (t = 15.64), average farm size (t = −8.90), cotton growing area (×103 ha, t = 1.90), area of Bt cotton (×103 ha, t = 1.69), proportion of area with Bt cotton (t = 1.13), and simulated average yield/ha (t = −0.47) that includes the effects of weather (see “Methods”; Additional file 1).
The means of the independent variables and t values for the regression coefficients are farmsize(1.568 ha, t = − 9.93), yield(603.8 kg/ha, t = − 3.25), Btarea(743.4 ha, t = 2.84).
We note that the high variability associated with low yield is a further dimension of risk (Fig. 7).
Factors affecting suicide rates
Economic distress can be a proximal cause of suicide, and at least seven factors appear to have influenced this in rainfed areas where cotton is a cash crop: (1) weather-related intrinsic low average yields and high variability  (Figs. 7 and 8); (2) increasing insecticide use before 2002 that increased costs and yield losses due to ecological disruption by induced pests (see text; Fig. 9); (3) high costs of Bt cotton seed, fertilizers, insecticide, and ecological disruption and crop loss after the introduction of Bt cotton (e.g., Fig. 8); (4) crop losses due to ill adapted and possibly ineffective Bt varieties [7, 19]; (5) increased usury costs to fund the new technologies; (6) suboptimal planting densities ; and (7) the uncertain effects of weather (e.g., drought or excessive rain as occurred in 2013) on pest and yield. Factors 2–5 are industry driven, and increase bankruptcy rates as farmers assume the gamble in the monsoon . As in China, risk-averse subsistence Indian farmers likely use greater quantities of pesticides that do not increase yield potential but may increase ecological disruption and risk of crop failure . Sound information to enable cotton farmers to make informed decisions about plant densities, varieties, pest control practices, and whether to plant Bt cotton is largely unavailable . This information gap was exploited by the insecticide industry before the introduction of Bt cotton and by the seed and chemical industry since. Technology promoters appear more interested in instrumentalizing the technologies for profit than in explaining the underlying causes of yield variation or to find satisfactory cheaper alternative solutions (e.g., high-density short-season cotton). Promoters willingly offer apparent solution with little regard for consequences. Instrumentalization of insecticides and Bt technology and their adoption by small stakeholders in India has hindered progress on ecologically based cotton production  and has contributed to human suffering. Economic analyses decoupled from the ecological and historical roots of the production problem confound the situation, and making the claim that the market determines the usefulness of Bt cotton and insecticide in India (and elsewhere) shameful (sensu ).
Does Bt cotton have a role in Indian cotton?
Absent resistance to Bt toxin , quality Bt cotton provides excellent control of PBW  and good control of bollworm and would appear to have a role in high-yielding irrigated long-season cotton in India where PBW is a chronic problem and where the marginal cost of the technology is low. Proponents of Bt cotton claim that it reduces the input of disruptive insecticides and greatly reduces ecological disruption, but ultimately, this has not proven to be the case as year 2013 insecticide use is at year 2000 levels  (Additional file 1: Table S1). Most cotton in India is rainfed, and Bt cotton provides only prophylactic protection against late season spillover of pink bollworm from irrigated fields (see Figs. 1, 5) and against outbreaks of bollworm and Bt susceptible pests caused by area-wide insecticide disruption. Bt cotton is only a partial solution because it is ineffective against many cotton pests and may help induce outbreaks of others (e.g., sucking pests such as aphids, mealy bugs, jassids, and plant bugs) and result in increased insecticide use . More importantly, the cost of Bt cotton as a proportion of the total revenues to small farmers in rainfed areas can be very high (Fig. 8), and effective implementation of the technology requires among other things such as quality control of varieties, optimal planting density, resistance management to preserve susceptibility to Bt , and avoidance of insecticide use. These factors are major constraints in the predominant rainfed small farm cotton culture of south-central India.
The propensity of Indian cotton farmers to extend the season to harvest late-season bolls is counter-productive as PBW and bollworm infestations can then develop and increase intra-season carryover of pests. Short-season cottons can be high yielding and are designed to set and mature bolls quickly, lessening the need for insecticide for late-season pink bollworm (and bollworm) infestations. Customizing the technology developed with high-density short-season non-Bt cotton for irrigated cotton in southern California  (Additional file 1) appears to be a viable solution for irrigated cotton in India . Variations of this technology would also be applicable to rainfed cotton in central and south India where rainfall is low and variable and in areas of south India where a portion of the PBW population does not enter diapause . Furthermore, physiologically based demographic models (see “Methods”) as used here could provide a rapid way of evaluating short-season cotton varieties and control strategies for cotton pests in the different regions of India and elsewhere (e.g., ).
Climate change effects on rainfed cotton
In the light of this more thorough holistic agro-ecological analysis, recommendations by international agricultural economists [20, 44] and some Indian government official to implement the Bt technology in cotton (and other crops) as a solution for pest problems become questionable. Worldwide, the use of pesticides to solve pest problems promised short-run economic benefit but instead led farmers onto path dependency [56, 91] that increases system complexity by inducing pest outbreaks (iatrogenic effects) that may cause crop losses (idiopathic effects) [34, 47, 92] and increase costs (see Additional file 1). In his 1974 Nobel Prize in Economics lecture titled “The Pretense of Knowledge” concerning larger economic issues, F.A. von Hayek stated “…[economists]…have… little cause for pride: as a profession [we] … made a mess of things” . In biotechnology, agricultural economists have pushed forward agendas without understanding the ecological bases of the crop production problem and in the process they often wrongly filled the information gaps created by corporate intellectual property constraints on field research on GM crops . The adherence to doctrines that exclusively accept or select observations and disregard fundamental ecological principles for supporting scientific claims imposes serious limitations on their conclusions and has been a hindrance to progress in agricultural research . In India and elsewhere, subsistence farmers often lack a clear understanding of pest control issues that trapped them on a pesticide treadmill (e.g., ) and now onto a biotechnology treadmill  and that ignores the impending collapse of ground water levels for irrigated cotton . Subsistence farmers, especially in areas with low but high variable yields can ill afford the high costs of industrial farming technologies that contribute to bankruptcy and in some suicide cases.
In review, PBW has been a chronic severe problem in long-season irrigated Indian cotton and can provide inoculum for infestations of rainfed cotton during late summer amplifying feedback and creating an inherent conflict between the two systems. When insecticides became available for control of PBW and other pests, outbreaks of highly damaging bollworms (and other pests) were induced, and F1 Bt hybrid cotton that discouraged seed saving was introduced for control. Prior to the onset of heavy pesticide use, bollworm was not a major pest in Indian cotton . As a percentage of the total revenues, the costs of the Bt and insecticide technologies decrease with increasing yield making it an acceptable assurance option in high-yield areas, but not in areas with low yields with high variability where the high costs increase the risk of bankruptcy (and suicide). Suicides in rainfed areas of south-central India are inversely related to farm size and yields and directly related to area of Bt cotton adoption, or more likely the combined high costs of Bt seed and insecticide. Short-season high-density cotton is a viable solution in both irrigated and rainfed cotton reducing the need for the Bt technology. Even where irrigation is available, short-season cotton could be grown rainfed allowing the irrigation water and the period prior to the monsoon to be used for the production of other food crops. This would promote development of diversified and sustainable, including organic agriculture. A recent report shows that despite near complete adoption of Bt cotton in India, insecticide use was higher in 2013 than in 2000 and now targets induced outbreaks of hemipteran insect pests . Last, assuming no change in rainfall, increases in temperature due to climate change during the monsoon season would increase productivity <8 % in rainfed cotton in central and south India. The above results amply illustrate how policy makers need holistic analyses before new technologies are promoted in agricultural development.
Physiologically based demographic models (PBDM) of cotton and PBW (see [30, 52, 89]) are used to explain the underlying effects of weather and planting density on yield and PBW dynamics at the local, state, and national levels under irrigated and rainfed conditions prior to the introduction of insecticides and Bt cotton. Such explanatory models reference ecological principles and allow a relaxation of the assumption that only field observations are a valid basis for the study and management of agricultural systems .
The cotton PBDM predicts prospectively the daily time-varying age-mass structured growth dynamic of leaves, stems, and roots, and the number-mass age structured dynamics of fruit and yield formation  (see Additional file 1). The cotton model has been used in field studies in Arizona, California, Brazil, China, Egypt, and Sudan [31, 34, 47, 89] reproducing the rich biology of growth, development, and yield. The model for India was parameterized using a cotton-growth experiment conducted in 2002 on plant growth (weekly dry-weight by subunit and yield) ). The model was run using daily weather (see below) under irrigated and rainfed conditions. A water balance model based on  was used to estimate the daily effects of water stress on cotton phenology, growth, and yield formation. Daily available soil moisture was computed as the net of current available water above the wilting point plus rainfall minus evapo-transpiration as a function of leaf area index and current weather, and runoff above the soil carrying capacity. The moisture holding capacity in the 1 m2 × 1.5 m root zone is assumed 1150 l with a wilting point being 450 l.
PBDMs of ten pests of cotton in Arizona-California, including pink bollworm and bollworm (see Additional file 1) were developed and used in analyses of their impact on cotton growth and yield in Arizona and California [27, 29], Brazil , Sudan , and Egypt  (see Additional file 1). Only the pink bollworm model was used in our analysis of Indian cotton. The dynamics of PBW are intimately linked to cotton fruiting phenology, dynamics, and age structure, but unlike bollworm and other cotton pests, PBW attacks the standing crop without affecting plant growth dynamics. A major factor in PBW population dynamics is the evolved adaptation of winter dormancy that enables it to bridge crop cycles. The model captures the phenology of dormancy induction as regulated by decreasing temperature and photoperiod, and spring emergence from diapause as a function of temperature  (Fig. 2e, see Additional file 1). The effects of one and two toxin Bt cottons on pest dynamics, crop damage, and development of resistance in PBW and other cotton pests have been modeled [30, 33] but were not required in this analysis
The landscape of India, excluding Andaman and Nicobar Islands, was divided into 2855 lattice cells of 38 × 38 km. Daily weather data (i.e., max-min temperature, solar radiation (cal cm−2 d−1), mm rainfall, RH, runs of wind) for each cell during 1979 to 2010 were used to run the PBDMs. The goal was to capture the effects of weather at a regional level, and not to model specific locations or fields, though this is also possible. The weather data are from the Climate Forecast System Reanalysis (CFSR) of the United States National Centers for Environmental Prediction . The CFSR is a global, high-resolution, coupled atmosphere-ocean-land surface-sea ice system that estimates the state of these coupled domains . The data were downloaded using the get_cfsr_latlon function of the R statistical package EcoHydRology . Quality control of the data was made using 1 % random samples for all lattice cells.
Simulation studies and GIS mapping
Using the weather data to run the model, simulations were made for all of lattice cells of India, but smaller time- and geographic-scale studies were also made. For example, a detailed analysis was made for the lattice cell that includes the village of Telung Takli, Yavatmal, MH (78° 9′ E, 20° 10′ N) (i.e., the site of the 2012 documentary Bitter Seeds by filmmaker Micha Peled ).
Rainfed cotton is planted to germinate at the onset of the monsoon rains of mid to late June, while irrigated cotton is planted in mid-March to April. In the model, the planting date of irrigated cotton is assumed a random variable around day 90 + 15 with harvesting starting in October that can extend as late as February–March the following year. A planting density of 6 plants m−2 is assumed [80, 99], with the effects on yield of lower and higher planting densities explored in the supplemental materials. Unless indicated, cotton is non-Bt cotton, and yields are reported as lint cotton that is ~30 % of harvested seed cotton.
The model outputs numerous yearly summary variables (e.g., yield and PBW density), and all were geo-referenced and written by year to batch files for mapping and statistical analysis. Means, standard deviations, and CV as a percent at each location were computed for all variables across years. The cotton-PBW model was assumed equilibrating during the first year, and hence, the data were not used in computing the summary statistics. The summary variables should be viewed as indices of the time-place potential (see text).
The simulation data were mapped using inverse distance weighting or bi-cubic spline interpolation on a three km raster grid using the geographic information systems (GIS) software Geographic Resources Analysis Support System (GRASS) . Red on the color bar indicates high favorability, and clear indicates very low favorability.
Analysis of farmer suicides
Controversy concerning the link of suicides of cotton farmers to increased Bt cotton adoption is widespread in the literature (see text), but a more nuanced approach requires data on other potential contributing variables. Suicide is a crime in India, and the suicide data are from the National Crime Records Bureau of India ; distribution of rainfed and irrigated cotton is from the Global Agro-ecological Zones database ; average farm size in hectares is for years 2008–2009; estimates of Bt cotton area in India are from the International Service for the Acquisition of Agri-biotech Applications , and cotton area is from the M3-Crops Data . The weather-driven estimates of prospective cotton yields are predicted by the model.
We acknowledge the help of Indian researchers who remain anonymous. We are grateful to Dr. M. Neteler (Fondazione Edmund Mach—Centro Ricerca e Innovazione, Trento, Italy, http://gis.fem-environment.eu/), and the international network of codevelopers for maintaining the Geographic Resources Analysis Support System (GRASS) software and making it available to the scientific community. This research was supported by the University of California at Berkeley, the Center for the Analysis of Sustainable Agricultural Systems (CASAS, www.casasglobal.org), and ENEA, Centro Ricerche Casaccia, Roma, Italy.
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