Structural aspects of human lactoferrin in the iron-binding process studied by molecular dynamics and small-angle neutron scattering

Abstract.

Lactoferrin is a non-heme protein known for its ability to bind tightly Fe(III) ions in various physiological environments. Due to this feature lactoferrin plays an important role in the processes of iron regulation at the cellular level preventing the body from damages produced by high levels of free iron ions. The X-ray crystal structure of human lactoferrin shows that the iron-binding process leads to conformational changes within the protein structure. The present study was addressed to conformation stability of human lactoferrin in solution. Using molecular dynamics simulations, it was shown that Arg121 is the key amino acid in the stabilization of the Fe(III) ion in the N-lobe of human lactoferrin. The small-angle neutron scattering method allowed us to detect the structural differences between the open and closed conformation of human lactoferrin in solution. Our results indicate that the radius of gyration of apolactoferrin appears to be smaller than that of the hololactoferrin, \(R_{g}=24.16(\pm 0.707)\) Å and \(R_{g}= 26.20(\pm 1.191)\) Å, respectively. The low-resolution three-dimensional models computed for both forms of human lactoferrin in solution also show visible differences, both having a more compact conformation compared to the high-resolution structure.

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Change history

  • 16 November 2018

    The original article was published electronically on SpringerLink on 20 September 2018 without Open Access. The copyright of the article changed on 16 November 2018 with the author(s)��� decision to opt for Open Choice.

  • 16 November 2018

    The original article was published electronically on SpringerLink on 20 September 2018 without Open Access. The copyright of the article changed on 16 November 2018 with the author(s)��� decision to opt for Open Choice.

  • 16 November 2018

    The original article was published electronically on SpringerLink on 20 September 2018 without Open Access. The copyright of the article changed on 16 November 2018 with the author(s)��� decision to opt for Open Choice.

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Correspondence to Raul Victor Erhan.

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The original version of this article was revised due to a retrospective Open Access order.

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Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 License (https://doi.org/creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Anghel, L., Radulescu, A. & Erhan, R.V. Structural aspects of human lactoferrin in the iron-binding process studied by molecular dynamics and small-angle neutron scattering. Eur. Phys. J. E 41, 109 (2018). https://doi.org/10.1140/epje/i2018-11720-x

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Keywords

  • Soft Matter: Self-organisation and Supramolecular Assemblies